HsaEX6060765 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17466704-17487064:+
Coord C1 exon
chr9:17466704-17466889
Coord A exon
chr9:17484293-17484478
Coord C2 exon
chr9:17486987-17487064
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCAATATGTTACAGGCT
3' ss Score
8.17
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GATCTCAAGCTTACTCTCCTAGTATCAAGAATAAGTGAGACTGAATCTGCAATGGCAGAAATTGAAACAGCAGCATCTAAGCAGCTTCAAGAATTAGCATTGCAAAGTGAACAGGTCCTAGAAGGTGCACAGAAGACATTGCTGTTAGCCAATGAAAAAGTAGAAGAGTTCACCACATTTGTGAAG
Seq A exon
GCTTTGGCCAAAGAGTTGCAAAATGATGTCCATGTGGTAAGGCGACAAATAAGAGAGCTTAAAAAAATGAAGAAAAACAGGGACGCCTGTAAAACCTCAACCCATAAAGCCCAGACCTTGGCAGCTTCTATCCTGAACATTTCACGGTCAGATTTAGAGGAAATATTAGACACAGAAGATCAAGTG
Seq C2 exon
GAAATTGAAAAAACAAAAATTGATGCTGAAAATGACAAGGAATGGATGTTGTACATTCAGAAACTTCTTGAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'39-37,'39-36,40-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGCTTACTCTCCTAGTATCA
R:
TGAATGTACAACATCCATTCCTTGT
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)