RnoEX0022484 @ rn6
Exon Skipping
Gene
ENSRNOG00000043151 | Cntln
Description
centlein [Source:RGD Symbol;Acc:1308101]
Coordinates
chr5:103333064-103352641:+
Coord C1 exon
chr5:103333064-103333249
Coord A exon
chr5:103348923-103349108
Coord C2 exon
chr5:103352564-103352641
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTCTCGCTAATATCTTTTAGGCT
3' ss Score
7.15
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATCTCAAGATGAATCTCCTGATATCAAAACTAAATGACACGGAGACAGCCATGGCTCAGATCAAGAGCGCAGCGTCGGAGCAGCTCCAAGGCTTGGCGTTGCAGAGTGAGCAGGTCCTGGAAGGCACGCAGAAGAAACTGCTGCTGGCCAATGAAAAGATCGAGGAGTTCACTGTCTTTGTGCAG
Seq A exon
GCTTTGGTCAATGAGTTACAAAGTGATGCCCATAGGACAAGACAACAAGTCAGAGAGCTTAGGCAGACGCAGAAAAGCAGACATGCTTGTAAAACCTCAACCCATAAAGCCCAGACCTTGGCCGCTTCCATCCTGAACATCTCACGGTCAGACCTAGAAGAAATATTGCACACAGGAGATGAAATG
Seq C2 exon
GAAATCGAGAAGACAAAGATAGATGCTGAAAATGACAAGGACTGGATGTTGTACATTCAGAAACTTCTCCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043151_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.355 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAAAACTAAATGACACGGAGACA
R:
CTGTCCTTGGAGAAGTTTCTGA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]