MmuEX6094219 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:85100714-85118519:+
Coord C1 exon
chr4:85100714-85100899
Coord A exon
chr4:85115265-85115450
Coord C2 exon
chr4:85118442-85118519
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCAATATGTTTTAGGCT
3' ss Score
9.32
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATCTCAAGATGAGTGTCCTGATATCAAAACTAAATGACACAGAGACAGCCATGGCTCAGATTGAGACGGCGGCTTCAGAGCAGCTCCAGGGCTTAGCACTGCAGAGCGAGCAGGTCCTGGAAGGCGCGCAGAAGAAGCTGCTGTCCGCCAATGAGAAGATTGAAGAGTTCACCGTCTTTGTGAAG
Seq A exon
GCTTTGGTCAATGAGTTACAAAGTGATGTCCATGGGACAAGACATCAAATCAGAGAGCTTAAGAAGATGCAAAAAAGCAGACATGCTTGTAAAACCTCAACGCATAAAGCCCAGACCTTGGCAGCTTCCATCCTGAACATCTCACGGTCAGACCTAGAGGAGATACTGGACACCGAGGATGAACTG
Seq C2 exon
GAAATTGAGAAGACAAAGATAGACATTGAAAATGACAAGGAGTGGATGTTGTACATTCAGAAACTTCTTGAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'52-74,'52-71,58-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.223 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCAAGATGAGTGTCCTGA
R:
ATGTACAACATCCACTCCTTGTCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types