BtaEX6033385 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001847 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr8:26953625-26972019:-
Coord C1 exon
chr8:26971834-26972019
Coord A exon
chr8:26956173-26956358
Coord C2 exon
chr8:26953625-26953702
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCAATATGTTGCAGGCC
3' ss Score
9.42
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GATGTCAAGCTTACTTTCCTCCTGTCAAAAATAAATGAGACTGAATCTGCCATGGCAGAGATTGAAACAGCAGCATCTAAGCATCTTCAAGGATTAGCAATGCAAAGTGAGCAGGCCCTAGAAGGTGCACAGAAGAAATTGCTGCTAGCCAGTGAGAAAGTAGAAGAGTTCACCATATTTGTGAAG
Seq A exon
GCCTTGGTCAGAGAGTTACAAAATGATGTCCATTTGATTAGGCGACAAATCAGAGAGCTTAAAAAGATGCAGAAAAACAGGGATGCTTGTAAAACCTCAACCCATAAAGCCCAGACCTTGGCAGCTTCTATCCTGAACATTTCACGATCGGACCTAGAGGAAATACTGGACACAGAAGATGAAGCG
Seq C2 exon
GAAATTGAAAGGACGAAAACCGAGGCCGAAAATGACAAAGAATGGCTGTTGTACATTCGGAAACTTCTTGAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001847-'50-53,'50-52,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.129 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGCTTACTTTCCTCCTGT
R:
AGTTTCCGAATGTACAACAGCCA
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]