GgaEX6049859 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C332]
Coordinates
chrZ:32778447-32796690:+
Coord C1 exon
chrZ:32778447-32778632
Coord A exon
chrZ:32795118-32795303
Coord C2 exon
chrZ:32796613-32796690
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCTTTTGTCTTCCAGGCT
3' ss Score
11.29
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTCTCAGGCTGTCCAATCTAGAGAGCAAAGTGATTGAGACCGAATATGCTATGACTGAACTCGAGACTGCAGCATCTCAACAACTACACGGATTGGCCAAACAGAGTGGGCAGGCTTTGGAGACTGTTCAAAAGAAGCTACTGCTCGCCAATGACAAAATAGAGGAGTTCATGACGTTTGTGAAG
Seq A exon
GCTCTAACCAGAGAGATACACCATAGCATACAAGAGCTGAGAATAAAAGTCAAACAGGCAAAAAAAATGGAAGAAGCAAGGGCATGTAAAAAGGGCCTTTCCCAAGAGTCTGTTCAGTTGGCAGCATCTATCCTTAATGTTTCAACAACGGATCTTGAGGAGATATTAGAAGTAGAAGATGATGAG
Seq C2 exon
GAAGCAGCACAGGCAAAAATGGAATCTGAAAAAGACAAAGAATGGCTGCTCTGTATACAGAAACTTCTTGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015097-'8-11,'8-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.192
Domain overlap (PFAM):
C1:
PF097304=BicD=FE(25.2=100),PF083176=Spc7=PD(6.0=14.5),PF045137=Baculo_PEP_C=PD(1.5=3.2),PF127182=Tropomyosin_1=PD(9.6=22.6),PF045827=Reo_sigmaC=PD(28.5=75.8),PF079267=TPR_MLP1_2=PD(6.6=12.9),PF104984=IFT57=PD(35.0=69.4),PF087025=Fib_alpha=PD(39.1=69.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000032827fB4224
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCTGTCCAATCTAGAGAGC
R:
CTGTATACAGAGCAGCCATTCT
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]