DreEX6031825 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26142891-26149435:-
Coord C1 exon
chr1:26149250-26149435
Coord A exon
chr1:26143355-26143525
Coord C2 exon
chr1:26142891-26142965
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTTTTTTAAGGCT
3' ss Score
10.99
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GAGCAGAGAGTGAGCGTCCTGCAGGCACGGATAGGCGAGCGTGATCAGGCCATGACTGAGTTGGAACAGACGGCGTCTCAACAAATGCATGCTTTGACCGAGCAGAGCTCTCAGACTCTGGAATCTCTGCAGAGAAAACTAACCCTCGCCGAGTCTCAGCTGCGCCAGTTTCACACATTCATTCAG
Seq A exon
GCTCTGGCTAATGAATTGGCACAGGATGTGCAGGACACTAAAGCTCGTTTGAGGAGAAAGAAAAAGAGTACAAAAGAAGGAAACAAAATGTCCAAGTGCTCACTGGTGAAAGCTGCATCAATCCTCAACATGTCAGAAACAGACCTGGTGGACATGCTGGATACAGATGAG
Seq C2 exon
TGTGAGGAGGCGTTTGTGGGTCGTGGGCCAGACACAGATTGGACTGAACATGTTCAGCACATCCTTCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.351 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGAGTGAGCGTCCTG
R:
GCTGCTGAAGGATGTGCTGAA
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]