MmuEX6094219 @ mm9
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84746618-84764423:+
Coord C1 exon
chr4:84746618-84746803
Coord A exon
chr4:84761169-84761354
Coord C2 exon
chr4:84764346-84764423
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCAATATGTTTTAGGCT
3' ss Score
9.32
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATCTCAAGATGAGTGTCCTGATATCAAAACTAAATGACACAGAGACAGCCATGGCTCAGATTGAGACGGCGGCTTCAGAGCAGCTCCAGGGCTTAGCACTGCAGAGCGAGCAGGTCCTGGAAGGCGCGCAGAAGAAGCTGCTGTCCGCCAATGAGAAGATTGAAGAGTTCACCGTCTTTGTGAAG
Seq A exon
GCTTTGGTCAATGAGTTACAAAGTGATGTCCATGGGACAAGACATCAAATCAGAGAGCTTAAGAAGATGCAAAAAAGCAGACATGCTTGTAAAACCTCAACGCATAAAGCCCAGACCTTGGCAGCTTCCATCCTGAACATCTCACGGTCAGACCTAGAGGAGATACTGGACACCGAGGATGAACTG
Seq C2 exon
GAAATTGAGAAGACAAAGATAGACATTGAAAATGACAAGGAGTGGATGTTGTACATTCAGAAACTTCTTGAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'26-31,'26-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.226 C2=0.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(31.3=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCAAGATGAGTGTCCTGA
R:
ATGTACAACATCCACTCCTTGTCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: