GgaEX6049859 @ galGal3
Exon Skipping
Gene
ENSGALG00000015097 | CNTLN
Description
NA
Coordinates
chrZ:32684854-32704436:+
Coord C1 exon
chrZ:32684854-32685039
Coord A exon
chrZ:32702864-32703049
Coord C2 exon
chrZ:32704359-32704436
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCTTTTGTCTTCCAGGCT
3' ss Score
11.29
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTCTCAGGCTGTCCAATCTAGAGAGCAAAGTGATTGAGACCGAATATGCTATGACTGAACTCGAGACTGCAGCATCTCAACAACTACACGGATTGGCCAAACAGAGTGGGCAGGCTTTGGAGACTGTTCAAAAGAAGCTACTGCTCGCCAATGACAAAATAGAGGAGTTCATGACGTTTGTGAAG
Seq A exon
GCTCTAACCAGAGAGATACACCATAGCATACAAGAGCTGAGAATAAAAGTCAAACAGGCAAAAAAAATGGAAGAAGCAAGGGCATGTAAAAAGGGCCTTTCCCAAGAGTCTGTTCAGTTGGCAGCATCTATCCTTAATGTTTCAACAACGGATCTTGAGGAGATATTAGAAGTAGAAGATGATGAG
Seq C2 exon
GAAGCAGCACAGGCAAAAATGGAATCTGAAAAAGACAAAGAATGGCTGCTCTGTATACAGAAACTTCTTGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015097-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.016 C2=0.231
Domain overlap (PFAM):
C1:
PF127182=Tropomyosin_1=PD(10.2=24.2),PF045827=Reo_sigmaC=PD(25.1=69.4),PF079267=TPR_MLP1_2=PD(5.0=9.7),PF087025=Fib_alpha=PD(37.6=66.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCTGTCCAATCTAGAGAGC
R:
CTGTATACAGAGCAGCCATTCT
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]