HsaEX6067421 @ hg19
Exon Skipping
Gene
ENSG00000166987 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:20445]
Coordinates
chr12:57918063-57918747:+
Coord C1 exon
chr12:57918063-57918199
Coord A exon
chr12:57918503-57918605
Coord C2 exon
chr12:57918736-57918747
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGACCCTGTCCTCTCGCAGTCC
3' ss Score
10.16
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCACGCGGGAGCTGATTACACACAATGAATGGGGGCAATGAGAGCAGTGGAGCAGACAGAGCTGGGGGCCCTGTGGCCACATCTGTCCCCATCGGCTGGCAGCGCTGTGTGCGAGAGGGTGCTGTGCTCTACATCAG
Seq A exon
TCCAAGTGGCACAGAGCTGTCTTCCTTGGAGCAAACCCGGAGCTACCTCCTCAGCGATGGGACCTGCAAGTGCGGTCTGGAGTGTCCACTTAATGTCCCCAAG
Seq C2 exon
GTTTTCAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166987-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.071 C2=0.507
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(35.2=65.8)
A:
PF0142914=MBD=PD(55.0=94.3)
C2:
PF0142914=MBD=PD(14.1=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)