DreEX6024708 @ danRer10
Exon Skipping
Gene
ENSDARG00000086980 | mbd6
Description
methyl-CpG binding domain protein 6 [Source:ZFIN;Acc:ZDB-GENE-041027-3]
Coordinates
chr6:58903103-58907345:-
Coord C1 exon
chr6:58907206-58907345
Coord A exon
chr6:58903834-58903936
Coord C2 exon
chr6:58903103-58903271
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTTTCTTCCCCAGCCC
3' ss Score
9.88
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGCTGGATGTGTGTGATCAGAAAATGACGGGGGGCAGTGAGAGTGTAGCAGGAGAAAAAGATGGAGGAACGACGCTCATCGCTCAGGTCCCGGTCGGCTGGCGGAGGAAGGTGGAGGACGGAGCTGTGTCTTACATCAG
Seq A exon
CCCGAGTGGTACAGTCCTTCAATCTGTGGATGAGGTGAGGGTGTATCTGCGCACAGACGGCACATGTAAGTGTGGTCTCGAGTGCCCGCTTGTCCCAAATAAG
Seq C2 exon
GTCTTTAATTTTGACCCTGCTGCAATGGTCCAAGCTCCTGGTCATCAGTCGGGTAAAGTAGAGGAAGACATGACCAAACTCTGCAACCATCGCAGGAAAGTAGACGCTATGACAGCGTTATGTCAAAGCATGCATCCCTCACATCTCGCACCACTGGCTCAAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086980-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.000 C2=0.404
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(20.0=53.8)
A:
PF0142914=MBD=FE(32.4=100)
C2:
PF0142914=MBD=PD(45.7=84.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGAGAGTGTAGCAGGA
R:
CGAGATGTGAGGGATGCATGC
Band lengths:
255-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]