RnoEX6016721 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33440191-33445377:+
Coord C1 exon
chr3:33440191-33440496
Coord A exon
chr3:33444146-33444248
Coord C2 exon
chr3:33445197-33445377
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTCTAAACTGTCTTACAGCCC
3' ss Score
8.88
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATAATGGGAAACACTTTCACAATGGCTGATTTCAAGGACTTGGTTCCAAACTGAGCCGAACTTTCCCGATGTACTTCGTAGTCCGGGAAAACTGTGCTATGCTGGCCCAGTTTTGAAAGGCCACCATGCTCGGTAATAGAAGGATATCATCTTATTGCTGATATCTTTGGAGCACCCCAAGCAGACACAGAAAATGAATGGAGGCAAAGAGTGTGACGGAGGAGACAAGGAAGGCGGTCTTCCGGCTATCCAGGTTCCCGTGGGTTGGCAGCGTCGTGTGGACCATAATGGCGTGCTTTACATCAG
Seq A exon
CCCCAGTGGGTCTCTGTTATCTTGCTTGGACCAGGTTAAGACATACCTGCTTACTGATGGAACATGCAAGTGTGGCTTGGAGTGTCCTCTTATTCTTCCCAAG
Seq C2 exon
GTGTTTAACTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACGGCAGAAGACGTTAAGGCAGATGACGATGTCACAAAGCTGTGCACACATAAGAGAAAGATCATTGCAGTGGCCACCCTCCACCAAAGCATGGAGGCCCCACACCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGAAAACTGTGCTATGCT
R:
CTTCACAGCAGCTCCAGGATC
Band lengths:
257-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]