DreEX0045282 @ danRer10
Exon Skipping
Gene
ENSDARG00000059581 | mbd5
Description
methyl-CpG binding domain protein 5 [Source:ZFIN;Acc:ZDB-GENE-070209-125]
Coordinates
chr6:37364-39452:+
Coord C1 exon
chr6:37364-37758
Coord A exon
chr6:38686-38788
Coord C2 exon
chr6:39272-39452
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGCCC
3' ss Score
8.02
5' ss Seq
AAGGTCATT
5' ss Score
4.32
Exon sequences
Seq C1 exon
GAGCCATGGGTGTGCGAGAGCGGCCCCTGAGTGGCCCTTGAGTGCCGCAGACGCGTGTCCTGACCTCACTTCTTCTTCTTCAGTCTCCACTCTACTTCTTTCGGACTCTTTCTCATGGCTCCGGCCGGCCGGACTGCAGCGGCGGCGGGGTCTGTGTCTGCATGCGGCGCTGCGCTGGAGACGCCGTGCCGTCTGTGACTCCGCCCCTGAGCTGGACTTCCTCTTCTGAGCGTCAGGATGCGACGCGGCGCCGACACGCAGACGAGCGCCTGATCTGCAGGAGTTTAGCACTGGACCATAAACATGAATGGTGGAAAAGAGCGGGAGGGTACCTTCGCCCAGGTGCCCATCGGCTGGCAGAGGAAGCTGGAGGCCTCCGGTGTCCTGTACATCAG
Seq A exon
CCCCAGCGGATCAGTGCTGTCCTGTCTCGAGCAGGTCAAGTCTTACCTGCTGACCGATGGCACCTGTAAATGTGGTCTGGAATGTCCACTCATCCTCCCGAAG
Seq C2 exon
GTTTTTAACTTTGACCCTGGAGCGGCGGTGAAGCAGCGGACAGCAGAGGACGTGAAGGCTGACGAGGACGTGACGAAGCTCTGCATCCACAAGCGGAAGCTGATCGCGGTGGCGGCGCTGCATAAGAGCATGGAGCTGCAGCCGCCGGCGCTCACGCTCACCAGCCCCGGAGGAGGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059581-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.311
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(33.8=77.4)
A:
PF0142914=MBD=FE(47.9=100)
C2:
PF0142914=MBD=PD(15.5=18.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGTTTAGCACTGGACC
R:
CTCCATGCTCTTATGCAGCGC
Band lengths:
254-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]