MmuEX0028076 @ mm10
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49245542-49251423:+
Coord C1 exon
chr2:49245542-49246206
Coord A exon
chr2:49250139-49250241
Coord C2 exon
chr2:49251243-49251423
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAACTATCTTTGCAGTCC
3' ss Score
8.68
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TAGATAGTCGAGGTTATTTTAGTCCAGTATCAAGGTTCAAGGCAAAATGTGCAACTAAAAACTTTTCATCCCTTCCTCTTCTGCTTCAGACAGGTACCAGCATAGGTGAATTATGATTTTCCCTGGTTGAGAGTGTTTGGTTTTGCCTATGTAGACCATGCCTAGGAATGAAATACTTTTTTATTTAATGTAGATTATAATGGGGAACACTTTCACAATGGCTGATTTCAAGGACTTGGTTCCAAACTGAGCCCAAGTTTCCCCGTGTACTTCGTAGTCCGGGAAAACTGTGCTATGCTGGCCCAGTTTTGAAGGCCACCATGCTCTGTAATAGACGGATATCATCTTATTGCTGATATCTTTGGAGCACCCAAGCAGACACAGAAAATGAATGGAGGCAAAGAGTGTGACGGAGGAGACAAGGAAGGAGGTCTTGCAGCTATCCAGGTTCCTGTGGGTTGGCAGCGGCGTGTGGACCATAATGGCGTGCTGTACATCAG
Seq A exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGACCAGGTTAAGACATACCTGCTCACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
Seq C2 exon
GTGTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCAGAAGATGTTAAGGCAGATGATGATGTCACAAAGCTATGCATACATAAAAGAAAGATCATTGCAGTGGCCACACTCCATCAAAGCATGGAGGCCCCGCATCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-'51-45,'51-43,52-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGGAGACAAGGAAGGAG
R:
GTGAGCACCAGAGAAGGATGC
Band lengths:
252-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types