GgaEX1035295 @ galGal3
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36288277-36293910:+
Coord C1 exon
chr7:36288277-36288410
Coord A exon
chr7:36293183-36293285
Coord C2 exon
chr7:36293730-36293910
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTGTTTCTTTACAGTCC
3' ss Score
10.68
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTCATAAACAGAAACAGAAAAATGAATGGTGGAAAGGAGTGTGACGGAGGGGACACGGATGGAGGGCCACCAGCAGTGCAAGTTCCCGTTGGTTGGCAGCGACGGGTGGACCAAAGTGGAGTGCTCTATATCAG
Seq A exon
TCCCAGTGGGTCTTTATTATCCTGCTTGGAGCAGGTGAAGACCTACTTGCTGACTGATGGAACCTGCAAATGTGGCCTAGAATGTCCTCTTGTTCTTCCCAAG
Seq C2 exon
GTCTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCTGAAGATGTTAAAGCAGATGAAGATGTCACCAAACTATGCATACATAAAAGAAAGATTATTGCTGTGGCTACACTTCATAAAAGCATGGAAGCACCACATCCTTCACTAGTTCTAACTAGTCCTGGTGGTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.000 C2=0.306
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(30.9=46.7)
A:
PF0142914=MBD=FE(50.0=100)
C2:
PF0142914=MBD=PD(16.2=18.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCAAGTTCCCGTTGGTT
R:
TTGTTCCACCACCAGGACTAGT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]