DmeEX0009345 @ dm6
Exon Skipping
Gene
FBgn0016754 | sba
Description
The gene six-banded is referred to in FlyBase by the symbol Dmelsba (CG13598, FBgn0016754). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is 3R:23894174..23922973. Its molecular function is described by: chromatin binding; DNA binding. The biological processes in which it is involved are not known. 14 alleles are reported. The phenotype of these alleles manifest in: wing vein. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-24 hour embryonic stages, during late pupal stages.
Coordinates
chr3R:23903128-23920846:-
Coord C1 exon
chr3R:23920007-23920846
Coord A exon
chr3R:23913796-23913919
Coord C2 exon
chr3R:23903128-23903461
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTAACCCTTTTTTTTTCCAGCCC
3' ss Score
9.47
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CACCAGCAACAGCAACAGATATTACCAGCTGGCTTGGTAAACGGCAATGGCAGCGGCAACATGATGCAAGTAGCAAATCTGCATCTGCAGCAGCAACAGCAGCAGCGAAACAGTCAGCAGCACATATTTGTCTGCCCCACCAGCAACCAGCAGCTCCTTTTGCAACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAACAAACCAAACAGCGCCAGGCGCAAATAAAGTTGCCAATAAAGTCAGCGGCAACAACGGGAGTAACGGCAGCAACTGTTGCTGCTGCAACTGCTGCTACTGGGGCAACGCATTGCATGTCGACAACAATTGCGGCGCGTCAAATGAGTCAGAACAATCAGCTCTATGCCAAGAATGTTGCCAAAGCCAACAATGCCAGTAGCAATGGCAATATCAACAGGAAGACGGCCACTAGCTACAATGGAAATTTGGCCCCCGGCTGGCGTCGCTTGACCAACAACAATGAGGTGGCCTATATCAG
Seq A exon
CCCCTCGGGCAAAACGCTGCGCACGCAGTTCCAGATCAAGGACTATCTGCTCACACAGGGTACCTGCAAGTGCGGCCTGCCGTGTCCGCTGCGCCCGGAGTATCTATTCGACTTTAATGCACAG
Seq C2 exon
GTGCCCAACCAGCCGCTCAAGTTGCCAACGGAGGCGTCAACGGCGACGCCGACACCTTGCCGGCACCAGCGGCGATTTCTTGAATCTCAGCAGCTTCAGCTGCCACAGCAGCAGCAACAGCAACAACATCTGCAGCATCAGCAGCAGCAACAACAGGCTGTCAAAGATGTATCTGTAGACGTAGCCGTATCCGTATCTGGGCCAGCAGCTGTCAGCGATGTGTTCTCCACGCTGATGACATCGACAGCGAGAACGGCGACGATGGTGACACCAACAGCAGCAACATCACCAGCCCAGGCGGCAACAACCACCACACATGAAATGGCCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0016754_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=0.024 C2=0.848
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(32.6=10.9)
A:
PF0142914=MBD=FE(46.1=100)
C2:
PF0142914=MBD=PD(19.1=15.2)
Main Inclusion Isoform:
FBpp0303406
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0111801, FBpp0111802, FBpp0300786, FBpp0300787, FBpp0300788, FBpp0307193
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAACAATGAGGTGGCCT
R:
AGAACACATCGCTGACAGCTG
Band lengths:
254-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)