MmuEX6051857 @ mm10
Exon Skipping
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127286794-127287538:-
Coord C1 exon
chr10:127287396-127287538
Coord A exon
chr10:127287068-127287170
Coord C2 exon
chr10:127286794-127286956
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGACCCTGTTCTTTCCCAGCCC
3' ss Score
8.05
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCACAGGGGAGCTCATCACACACAATGAATGGAGACAATGCGAGCAGTGCAGCAGACAGAGCTGGGGGCCCTGCCGCCACGCCTGTCCCCATCCCCATCGGGTGGCAACGCTGTGTGCGAGAAGGTGCTGTGTACTATATCAG
Seq A exon
CCCAAGTGGCACAGAGCTGTCTTCCTTGGAGCAAACCCGTAGCTACCTCCTCAGCGATGGGACCTGCAAGTGCGGTCTGGAGTGTCCACTTAATGTACCCAAG
Seq C2 exon
GTTTTCAACTTTGACCCTCTGGCCCCGGTGACCCCGGGTGGGGCTGGGGTGGGGCCTGCATCAGAGGAGGACATGACCAAGCTGTGCAACCACAGGCGGAAAGCTGTTGCCATGGCAACTCTGTACCGCAGCATGGAGACCACCTGCTCACACTCTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=0.076 C2=0.515
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(33.3=57.5)
A:
PF0142914=MBD=FE(49.3=100)
C2:
PF0142914=MBD=PD(14.5=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTGCAGCAGACAGAG
R:
AGAGTGTGAGCAGGTGGTCTC
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types