RnoEX6031868 @ rn6
Exon Skipping
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70576270-70576995:-
Coord C1 exon
chr7:70576859-70576995
Coord A exon
chr7:70576543-70576645
Coord C2 exon
chr7:70576270-70576432
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATGACCCTGTTCTTTTGTAGCCC
3' ss Score
9.3
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCACAAGGGAGCTGATCGCACACAATGAATGGAGGGAATGAGAGCAGTGCAGCAGACAGAGCCGGGGGCCCTGCGGCCACGGCTGTCCCCATCGGGTGGCAGCGCTGTGTACGAGAAGGTGCTGTGTACTATATCAG
Seq A exon
CCCAAGTGGCACAGAGCTGTCTTCCTTGGAGCAAACCCGTAGCTACCTCCTCAGCGATGGGACCTGCAAGTGCGGTCTGGAGTGTCCACTCAATGTACCCAAG
Seq C2 exon
GTTTTCAACTTTGACCCTCTGGCCCCGGTGACCCCGGGTGGGGCTGGGGTGGGGCCTGCATCGGAGGAGGACATGACCAAGCTGTGCAACCACAGGCGGAAAGCTGTTGCCATGGCAACTCTGTACCGCAGCATGGAGACCACCTGCTCACATTCTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.057 C2=0.582
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(35.2=65.8)
A:
PF0142914=MBD=FE(47.9=100)
C2:
PF0142914=MBD=PD(14.1=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGAGCAGTGCAGCAGAC
R:
ATGTGAGCAGGTGGTCTCCAT
Band lengths:
254-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]