BtaEX0021552 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010616 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr5:56281005-56282085:-
Coord C1 exon
chr5:56281985-56282085
Coord A exon
chr5:56281282-56281384
Coord C2 exon
chr5:56281005-56281167
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGACCCTATCCTCTCCCAGTCC
3' ss Score
8.7
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
AGATTCCTGACTGTTCTTTTTCTCTCCTGTGTTGCAGGTGTGGGCTAAGCCGGCGGCCCCGGCTTTAGACTGGACCCCACAATGTTTGCAGACATGTTCAG
Seq A exon
TCCAAGTGGCACAGAGCTGTCTTCCTTGGAGCAAACCCGGAGCTACCTCCTCAGCGATGGGACCTGCAAGTGCGGTCTGGAGTGTCCACTCAATGTCCCCAAG
Seq C2 exon
GTTTTCAACTTTGACCCTTTGGCCCCGGTGACCCCGGGTGGGGCTGGGGTGGGGCCAGCATCAGAGGAGGACATGACCAAGCTGTGCAACCACCGGCGGAAAGCTGTTGCCATGGCAACTCTGTACCGCAGCATGGAGACCACCTGCTCACACTCTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010616-'0-1,'0-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.086 C2=0.655
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTTCTCTCCTGTGTTGCAG
R:
AAGAGTGTGAGCAGGTGGTCT
Band lengths:
244-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development