GgaEX1035295 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34160695-34166307:+
Coord C1 exon
chr7:34160695-34160807
Coord A exon
chr7:34165580-34165682
Coord C2 exon
chr7:34166127-34166307
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTGTTTCTTTACAGTCC
3' ss Score
10.68
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGAATGGTGGAAAGGAGTGTGACGGAGGGGACACGGATGGAGGGCCACCAGCAGTGCAAGTTCCCGTTGGTTGGCAGCGACGGGTGGACCAAAGTGGAGTGCTCTATATCAG
Seq A exon
TCCCAGTGGGTCTTTATTATCCTGCTTGGAGCAGGTGAAGACCTACTTGCTGACTGATGGAACCTGCAAATGTGGCCTAGAATGTCCTCTTGTTCTTCCCAAG
Seq C2 exon
GTCTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCTGAAGATGTTAAAGCAGATGAAGATGTCACCAAACTATGCATACATAAAAGAAAGATTATTGCTGTGGCTACACTTCATAAAAGCATGGAAGCACCACATCCTTCACTAGTTCTAACTAGTCCTGGTGGTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'2-4,'2-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.000 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000020351fB9273
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCAAGTTCCCGTTGGTT
R:
TTGTTCCACCACCAGGACTAGT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]