BtaEX0021548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47851620-47858327:-
Coord C1 exon
chr2:47857928-47858327
Coord A exon
chr2:47852895-47852997
Coord C2 exon
chr2:47851620-47851800
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAACTATTTTTACAGTCC
3' ss Score
7.15
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TGAATATGATTTTCGTTAGTCAGAAGCACTTGTTTTTACCCATGTAGACCATCCTTAGGAATTAAATATTGGTTATTTAATGTAGATTATAATGGGAAACTGATTTTTTCTACAATGGCAGATTTCAAGGACTTGGTTCCAAACTGAGCCGAAGCTTCCCAATGCATTTTGTACAGTCTGGGGAAAACTGTGCTGCATTGGCCATTTTTGAAGGCCACGATGCCCTGTAATACAAGGACATCATCTTATTGCTGATATCTTTGGGGAGTCCTAAGCAGACACAGAAAATGAATGGAGGCAAGGAGTGTGACGGAGGGGACAAGGATGGAGGTCTTCCAGCTATACAAGTTCCTGTGGGTTGGCAGCGTCGTGTGGATCAAAATGGAGTGCTTTACATCAG
Seq A exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGAGCAGGTTAAAACATACCTGCTTACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
Seq C2 exon
GTGTTTAATTTTGATCCTGGAGCTGCTGTGAAACAAAGAACTGCAGAAGATGTTAAAGCAGATGAAGATGTCACAAAGCTATGCATACATAAAAGAAAAATCATTGCAGTGGCCACACTTCATAAAAGCATGGAAACCCCACACCCTTCTCTGGTGCTCACCAGTCCCGGAGGAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.000 C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061479fB4126
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAAAACTGTGCTGCATT
R:
TTGTTTCACAGCAGCTCCAGG
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development