MmuEX0028076 @ mm9
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49101062-49106943:+
Coord C1 exon
chr2:49101062-49101726
Coord A exon
chr2:49105659-49105761
Coord C2 exon
chr2:49106763-49106943
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAACTATCTTTGCAGTCC
3' ss Score
8.68
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TAGATAGTCGAGGTTATTTTAGTCCAGTATCAAGGTTCAAGGCAAAATGTGCAACTAAAAACTTTTCATCCCTTCCTCTTCTGCTTCAGACAGGTACCAGCATAGGTGAATTATGATTTTCCCTGGTTGAGAGTGTTTGGTTTTGCCTATGTAGACCATGCCTAGGAATGAAATACTTTTTTATTTAATGTAGATTATAATGGGGAACACTTTCACAATGGCTGATTTCAAGGACTTGGTTCCAAACTGAGCCCAAGTTTCCCCGTGTACTTCGTAGTCCGGGAAAACTGTGCTATGCTGGCCCAGTTTTGAAGGCCACCATGCTCTGTAATAGACGGATATCATCTTATTGCTGATATCTTTGGAGCACCCAAGCAGACACAGAAAATGAATGGAGGCAAAGAGTGTGACGGAGGAGACAAGGAAGGAGGTCTTGCAGCTATCCAGGTTCCTGTGGGTTGGCAGCGGCGTGTGGACCATAATGGCGTGCTGTACATCAG
Seq A exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGACCAGGTTAAGACATACCTGCTCACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
Seq C2 exon
GTGTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCAGAAGATGTTAAGGCAGATGATGATGTCACAAAGCTATGCATACATAAAAGAAAGATCATTGCAGTGGCCACACTCCATCAAAGCATGGAGGCCCCGCATCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-'26-31,'26-30,27-31
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGGAGACAAGGAAGGAG
R:
GTGAGCACCAGAGAAGGATGC
Band lengths:
252-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: