HsaEX6079162 @ hg38
Exon Skipping
Gene
ENSG00000101203 | COL20A1
Description
collagen type XX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr20:63319487-63320368:+
Coord C1 exon
chr20:63319487-63319596
Coord A exon
chr20:63320039-63320197
Coord C2 exon
chr20:63320291-63320368
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGTGCCGTCTCACAGGTG
3' ss Score
10.55
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCGGGAAGAAGTCCCTGACCTACTTCCACCGTGACCCCAGGGCTGCCTTGCAGGAGGCCACCTTCGACCCGCAGGAAGTGAGGAAGATTTTCTTCGGGAGCTTCCACAAG
Seq A exon
GTGCACGTGGCTGTGGGCCGCTCCAAGGTCAGGCTCTATGTGGACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGGCAGCCCACCCGCTGCGGGCTTCGTCACGCTGGGGAGGCTGGCCAAGGCCAGGGGCCCCCGGAGCAGTTCGGCCGCG
Seq C2 exon
TTTCAGCTCCAGATGCTGCAGATCGTGTGCAGTGACACCTGGGCCGATGAGGACCGGTGCTGTGAGCTCCCTGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101203-'23-33,'23-31,24-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCTGACCTACTTCCACC
R:
CGAGGCAGGGAGCTCACAG
Band lengths:
179-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains