BtaEX6065469 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54740039-54740893:-
Coord C1 exon
chr13:54740784-54740893
Coord A exon
chr13:54740209-54740367
Coord C2 exon
chr13:54740039-54740119
Length
159 bp
Sequences
Splice sites
3' ss Seq
AACCTCCTGCTGTCTCCCAGGTG
3' ss Score
9.2
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCGGCAGGAAGTCGCTGACCTACTTCAACCGTGACCCCAGGGCCACCTTGCAGGAGGTCACCTTTGACCTGCCTGAAGTGAGGAGGATATTCTTTGGGAGTTTCCACAAG
Seq A exon
GTGCATGTGGCCGTGGGCCGAGCCAGGGTCAGGCTCTACGTGGACTGCCGGAAGGTGGCCGAGAGGCCCATCGGGGAGGCCGGCGGCCTGCCTGCTGCCGGCTTCGTCATGCTGGGCAGGTTGGCCAAAGCCCGGGGCCCCCGGAGCAGCTCCGCCTCG
Seq C2 exon
AAGTTCCAGCTCCAGGTGCTACAGCTCGTGTGCAATGACTCGTGGGCAGAGGAGGACAGGTGCTGTGAGCTCCCAGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'32-30,'32-29,33-30=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGTCGCTGACCTACT
R:
CGATGCTGGGAGCTCACA
Band lengths:
188-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]