GgaEX6023134 @ galGal3
Exon Skipping
Gene
ENSGALG00000005797 | COL20A1
Description
NA
Coordinates
chr20:8843761-8847492:+
Coord C1 exon
chr20:8843761-8843870
Coord A exon
chr20:8845399-8845557
Coord C2 exon
chr20:8847415-8847492
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACCTTGGTCTTCCCACCCAGGTG
3' ss Score
9.98
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CCAGTAAGAAAACCTTGACCTATTTCAATCATGACTACAAGGCTGATTTGCAGGAAGTCTCCTTTGACCAGCAGGAAGTGAAGAAGATATTCTATGGGAGCTTTCATAAG
Seq A exon
GTGCACCTTGCAGTGAGCCTTTTCAAGATCAAGCTCTATCTGGACTGTAAAAAAATAGCAGAGAGACCCATCAACACCGTTGGCAGCATCTCCACCGCTGGCTTCATCATGCTGGGAAAAGTGACGCGGACCAGAGGGCCCAGGAGTGGATCAGCATCG
Seq C2 exon
TTCCAGCTGCAGTCATTGCAGGTTGTGTGCAACAGCTTAGGGGCGGAGGAGGACCGATGCTGTGATCTTCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005797-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTAAGAAAACCTTGACCTATTT
R:
ATGCAGGAAGATCACAGCATCG
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]