RnoEX6020706 @ rn6
Exon Skipping
Gene
ENSRNOG00000010326 | Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176514932-176515613:+
Coord C1 exon
chr3:176514932-176515041
Coord A exon
chr3:176515307-176515465
Coord C2 exon
chr3:176515536-176515613
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACTTACTATGGTTTCTGCAGGTA
3' ss Score
8.71
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTGGCAGAAAGTCTCTGACTTACTTCAACCATGATTCCAGAGCAGCCTTGCAGGAGATCACCTTTGACCTGCAGGATGCAAAGAAGATTTTCTTTGGAAGCTTCCACAAG
Seq A exon
GTACATATAGCTGTAGGCCACTCTAAGATCAGACTTTACGTGGACTGTCGGAAGGTGGCTGAGCGGCCCATTGGGGATGCTGGCAGCCCACCCACAGCTGGTTTCATCACACTAGGGAGGCTAGCCAAGGCCAGAGGGCCACGGAGCAGCTCAGCCACA
Seq C2 exon
TTCCAGCTCCAGATGTTGCAGATCATGTGCAGCGATACGTGGGCGGACAAGGACAGGTGCTGCGAGCTTCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010326-'28-38,'28-35,29-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTGACTTACTTCAACCATGA
R:
AATGCAGGAAGCTCGCAGC
Band lengths:
178-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]