HsaEX6079172 @ hg19
Exon Skipping
Gene
ENSG00000101203 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670]
Coordinates
chr20:61941733-61943100:+
Coord C1 exon
chr20:61941733-61941862
Coord A exon
chr20:61942746-61942891
Coord C2 exon
chr20:61942977-61943100
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGCATGGCCCCCCAGCAC
3' ss Score
5.1
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGTGGTGGAGGGACCCGCCGCCTCCACGGAGCTGCACAACCTGGCCTCCCGCACAGAGTACCTGGTCTCCGTGTTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGGCCTGGTGACCACAG
Seq A exon
CACCTCTGCCTCCGCCCCGGGCGCTGACCCTGGCCGCAGTGACGCCCAGAACCGTCCACCTCACCTGGCAGCCCTCGGCCGGGGCCACCCACTACCTGGTGCGATGTTCTCCTGCTTCCCCCAAGGGTGAAGAGGAGGAGCGAGAG
Seq C2 exon
GTGCAGGTCGGGCGGCCCGAGGTGCTGCTGGATGGCCTGGAACCTGGCAGGGACTATGAGGTCTCGGTGCAGAGCCTGCGAGGCCCTGAGGGCAGCGAGGCCCGGGGCATCCGTGCCAGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101203-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.469 C2=0.857
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(56.2=91.8)
C2:
PF0004116=fn3=PD(41.2=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTGGAGGGACCC
R:
GCTCTGCACCGAGACCTCATA
Band lengths:
205-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)