BtaEX6065457 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54745936-54747237:-
Coord C1 exon
chr13:54747108-54747237
Coord A exon
chr13:54746168-54746313
Coord C2 exon
chr13:54745936-54746059
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCCCGTCTCCCCCAGCAC
3' ss Score
9.59
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTGGTGGTGGAAGGGCCCACCTCGTCAGCACAGCTGCACAACCTGACCTCCAGCACCGAGTACCTGGTCTCTGTGTTCCCCCTCTACAAGGCTGGCGTCGGCGAGGGCCTGCAGGGCCTGGCGACCACAG
Seq A exon
CACCCCTGCCCCCACCCCAGGCGCTGACCCTGGCTGCAGTGACACCCAAAACTGTCCGCCTCACCTGGCAGCCCTCGGCAGAGGCCACCCAGTACCTGGTGCGGTGGTCACCTGCCTCCCCCAAGGGCGAGGAGGAGAGGAGAGAG
Seq C2 exon
GTGCGGGTGGGGCGGCCGGAGGTGCTGCTGGATGGCCTGGCCCCGGGCAGGGACTATGACGTGTGGGTGCAGAGCCTTCGAGGGGCAGAGATCAGTGAGGCCCAGGGCATCCGTGCCAGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.510 C2=0.333
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(55.6=91.8)
C2:
PF0004116=fn3=PD(42.0=81.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTGGAAGGGCCC
R:
CCTGGGCCTCACTGATCTCTG
Band lengths:
236-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]