GgaEX1016493 @ galGal4
Exon Skipping
Gene
ENSGALG00000005797 | COL20A1
Description
collagen alpha-1(XX) chain precursor [Source:RefSeq peptide;Acc:NP_001004392]
Coordinates
chr20:9184018-9186173:+
Coord C1 exon
chr20:9184018-9184147
Coord A exon
chr20:9184653-9184798
Coord C2 exon
chr20:9186050-9186173
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTGCCACATTTCCCTCCCAGTGC
3' ss Score
8.46
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTGCTTCTGGATGGAGCCATCTCCTCTCTGAGGCTTTCCAACCTGACCTCACACACGGAGTACCTGGTGTCAGTGTTTCCTGTTTATGACACAGCCGTTGGGGATGGGCTGAGAGGCGTCACCTCCACAT
Seq A exon
TGCCTCTGTCTGCCCCCCGCTCCCTGCGTGTCTCCGAGCTGAGCCACAACAGCATCAGGCTGAGCTGGAAGGCAGCCCAGGGAGCCGCGCAGTACCTGGTGCTCTGCTCTGCAGCCCCCGACGGAGCAGAGGACTATACGACAGAG
Seq C2 exon
ATTAAGGTGGCTGAGCCCGAGGTCCTGCTGGACGGGCTGTCACCCAGCACTGAGTACTCCATTGCAGTGTATGCGTTGTATGGGGAAGATGCCAGTGATCCAGCCAGCATCCAGGAAACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005797-'15-20,'15-19,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.071
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.0=77.3)
A:
PF0004116=fn3=PU(55.6=91.8)
C2:
PF0004116=fn3=PD(42.0=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTCTGGATGGAGCCAT
R:
TTTCCTGGATGCTGGCTGGAT
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]