DreEX6080064 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20556046-20558402:+
Coord C1 exon
chr23:20556046-20556175
Coord A exon
chr23:20558046-20558191
Coord C2 exon
chr23:20558273-20558402
Length
146 bp
Sequences
Splice sites
3' ss Seq
TAAATCCTCTTCTCTTTTAGTAC
3' ss Score
8.43
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTGGTGGTGAATGGAACAGAGTCCACAACTCTGCTGACAGGACTGTCCTCACAAACACAGTACCATCTATCCATCTTCCCCGTCTATGAGAATAAAGTGGGCTCCGCTCTCAGAGGCACCTTCACCACAT
Seq A exon
TACCGTTGGCAATCCCTGAGGCTCTGGAGGTCACAGCCTCCTCTGCCAGCAGTCTGCGGGTGCGCTGGCAGCCGGCTGCTGGAGCCACACAGTACATGGCCTTATACTCAGCACTCAATGATGGAGAGCCTGATGATGCCAAAGAG
Seq C2 exon
GTGAAGTTTGGACCTGCTCAGACAGATGTTGAATTGGTGGATTTGATCCCATCCACGGATTATTCAGTCACACTTTATGCACTGTATGATGAGGACCCCAGTGACCCAATCACAGCCATCGGCACCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517-'33-38,'33-37,34-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.082 C2=0.136
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=91.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACAACTCTGCTGACAG
R:
GCCGATGGCTGTGATTGGG
Band lengths:
234-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]