MmuEX0012204 @ mm9
Exon Skipping
Gene
ENSMUSG00000016356 | Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:180731971-180733413:+
Coord C1 exon
chr2:180731971-180732100
Coord A exon
chr2:180733059-180733204
Coord C2 exon
chr2:180733290-180733413
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGATGATCATCCCTTCCTAGCAC
3' ss Score
5.14
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGGTGGTGGAGGGGCCTGTCTCATCCATGGAGCTTGGAAACCTGACCTCCAGCACAGAATACTTGGTCTCTGTGCTTCCTGTCTATGAGAGTGGGGTTGGCAAGAGCCTGCAAGGCCGGGCAACCACAG
Seq A exon
CACCCCTGCCTCCACCTGGGCCACTGACCCTAGCTGCAGTGACACCCAGAACTCTCCACGTCACCTGGCCGCCCTCTGCTGGGGTCACTCAGTACTTGGTGCAGTACTTGCTGGCTACCTCCACTGGGGAGGAGCAAAAGAGAGAG
Seq C2 exon
GTACATGTGGGACAGCCTGAGGTACTGCTGGATGGTCTGGAGCCTGGCCAGGACTATGATGTCTCAGTGCAGAGCCTTCGGGGACCAGAGGCCAGCGAGGTCCAGAGCATCCGTGCCAGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016356-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.390 C2=0.743
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(57.0=91.8)
C2:
PF0004116=fn3=PD(40.5=76.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGAGGGGCCTGTC
R:
CACGGATGCTCTGGACCTCG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: