HsaEX6085464 @ hg38
Exon Skipping
Gene
ENSG00000182168 | UNC5C
Description
unc-5 netrin receptor C [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr4:95242429-95250667:-
Coord C1 exon
chr4:95250487-95250667
Coord A exon
chr4:95244977-95245144
Coord C2 exon
chr4:95242429-95242593
Length
168 bp
Sequences
Splice sites
3' ss Seq
TACTGTTTGCCTCCTTTCAGTCA
3' ss Score
8.35
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGGAATGGTTGAAAAATGAAGACATAATTGATCCCGTTGAAGATCGGAATTTTTATATTACTATTGATCACAACCTCATCATAAAGCAGGCCCGACTCTCTGATACTGCAAATTACACCTGTGTTGCCAAAAACATTGTTGCCAAGAGGAAAAGTACAACTGCCACTGTCATAGTCTATG
Seq A exon
TCAACGGTGGCTGGTCCACCTGGACGGAGTGGTCTGTGTGTAACAGCCGCTGTGGACGAGGGTATCAGAAACGTACAAGGACTTGTACCAACCCGGCACCACTCAATGGGGGTGCCTTCTGTGAAGGGCAGAGTGTGCAGAAAATAGCCTGTACTACGTTATGCCCAG
Seq C2 exon
TGGATGGCAGGTGGACGCCATGGAGCAAGTGGTCTACTTGTGGAACTGAGTGCACCCACTGGCGCAGGAGGGAGTGCACGGCGCCAGCCCCCAAGAATGGAGGCAAGGACTGCGACGGCCTCGTCTTGCAATCCAAGAACTGCACTGATGGGCTTTGCATGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168-'15-17,'15-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGCAGGCCCGACTCTCT
R:
AGCCCATCAGTGCAGTTCTTG
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains