MmuEX6074410 @ mm9
Exon Skipping
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 homolog C (C. elegans) [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141420678-141434146:+
Coord C1 exon
chr3:141420678-141420858
Coord A exon
chr3:141431408-141431575
Coord C2 exon
chr3:141433982-141434146
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTTTGTCTCCTCCAGTTA
3' ss Score
8.95
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAGAATGGCTAAAGAATGAAGACATAATTGATCCTGCTGAAGATCGGAACTTTTATATTACTATCGATCACAACCTGATCATCAAGCAAGCCCGACTCTCAGATACAGCAAATTATACCTGTGTTGCCAAAAATATTGTTGCCAAGAGAAAAAGCACCACAGCCACTGTCATCGTGTATG
Seq A exon
TTAATGGTGGCTGGTCCACCTGGACAGAGTGGTCTGTGTGTAACAGCCGCTGTGGGCGAGGATATCAGAAACGCACAAGAACCTGCACCAACCCAGCCCCACTCAATGGTGGGGCCTTCTGTGAGGGGCAGAGTGTGCAGAAAATAGCATGCACTACGTTATGTCCAG
Seq C2 exon
TGGATGGTAGGTGGACTTCATGGAGCAAATGGTCAACCTGTGGGACTGAATGCACCCACTGGCGCAGGAGGGAGTGTACAGCACCAGCCCCCAAGAACGGGGGTAAGGACTGTGATGGCCTGGTCCTCCAATCCAAGAACTGCACTGATGGGCTGTGCATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5),PF150281=PTCRA=PU(24.5=47.4)
C2:
PF150281=PTCRA=FE(50.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCAAGCAAGCCCGACTC
R:
AGCCCATCAGTGCAGTTCTTG
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: