MmuEX6074410 @ mm10
Exon Skipping
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 netrin receptor C [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141757714-141771182:+
Coord C1 exon
chr3:141757714-141757894
Coord A exon
chr3:141768444-141768611
Coord C2 exon
chr3:141771018-141771182
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTTTGTCTCCTCCAGTTA
3' ss Score
8.95
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAGAATGGCTAAAGAATGAAGACATAATTGATCCTGCTGAAGATCGGAACTTTTATATTACTATCGATCACAACCTGATCATCAAGCAAGCCCGACTCTCAGATACAGCAAATTATACCTGTGTTGCCAAAAATATTGTTGCCAAGAGAAAAAGCACCACAGCCACTGTCATCGTGTATG
Seq A exon
TTAATGGTGGCTGGTCCACCTGGACAGAGTGGTCTGTGTGTAACAGCCGCTGTGGGCGAGGATATCAGAAACGCACAAGAACCTGCACCAACCCAGCCCCACTCAATGGTGGGGCCTTCTGTGAGGGGCAGAGTGTGCAGAAAATAGCATGCACTACGTTATGTCCAG
Seq C2 exon
TGGATGGTAGGTGGACTTCATGGAGCAAATGGTCAACCTGTGGGACTGAATGCACCCACTGGCGCAGGAGGGAGTGTACAGCACCAGCCCCCAAGAACGGGGGTAAGGACTGTGATGGCCTGGTCCTCCAATCCAAGAACTGCACTGATGGGCTGTGCATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921-'12-12,'12-8,15-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCAAGCAAGCCCGACTC
R:
AGCCCATCAGTGCAGTTCTTG
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types