BtaEX6030439 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30710103-30717275:+
Coord C1 exon
chr6:30710103-30710283
Coord A exon
chr6:30713999-30714166
Coord C2 exon
chr6:30717111-30717275
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTTTTATCATTTACTTCCAGTAA
3' ss Score
6.27
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGGAATGGTTGAAAAATGAAGACATCATCGATCCTGTTGAAGATCGGAATTTTTATATTACTATTGATCACAACCTCATCATCAAGCAGGCCCGCCTCTCAGATACTGCCAACTATACTTGTGTTGCCAAAAACATTGTCGCCAAGAGGAAAAGCACAACCGCAACTGTCATAGTCTATG
Seq A exon
TAAATGGTGGCTGGTCCACTTGGACAGAGTGGTCTGTGTGTAATAGCCGTTGCGGACGGGGGTATCAGAAGCGTACAAGGACCTGTACCAACCCAGCTCCGCTCAATGGTGGTGCCTTCTGTGAAGGGCAGAGTGTACAAAAGATAGCCTGTACCACGTTATGCCCAG
Seq C2 exon
TGGATGGCAGGTGGACCTCGTGGAGCAAGTGGTCTACCTGCGGGACCGAGTGCACTCACTGGCGCAGGAGGGAGTGCACGGCACCAGCCCCCAAGAATGGAGGCAAGGACTGCGATGGTCTTGTCCTGCAGTCCAAGAACTGCACGGATGGGCTGTGCATGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCATCATCAAGCAGGCC
R:
GACTGCAGGACAAGACCATCG
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]