RnoEX0096629 @ rn6
Exon Skipping
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247325877-247333499:+
Coord C1 exon
chr2:247325877-247326057
Coord A exon
chr2:247330402-247330569
Coord C2 exon
chr2:247333335-247333499
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTTTGTCTCCTTCAGTTA
3' ss Score
8.91
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGGAGTGGCTAAAGAATGAAGACATAATTGATCCTGTCGAAGATCGGAATTTTTATATCACTATCGATCACAACCTGATCATCAAGCAGGCACGACTCTCAGATACAGCGAATTATACCTGTGTTGCCAAAAACATTGTTGCCAAGAGGAAAAGCACCACAGCCACCGTCATCGTGTATG
Seq A exon
TTAATGGTGGCTGGTCCACCTGGGCAGAATGGTCTGTGTGTAACAGCCGCTGTGGGCGAGGATATCAGAAACGCACAAGAACCTGCACCAACCCAGCCCCCCTCAATGGTGGGGCCTTCTGCGAGGGGCAGAGTGTACAGAAAATAGCATGCACCACGTTATGCCCAG
Seq C2 exon
TGGATGGCAGGTGGACTTCGTGGAGCAAATGGTCAACTTGTGGGACTGAGTGCACCCACTGGCGGAGGAGGGAGTGTACAGCACCAGCCCCCAAGAACGGGGGTAAGGACTGTGATGGCCTGGTCCTCCAATCCAAGAACTGCACCGATGGGCTGTGCATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCAAGCAGGCACGAC
R:
CGGTGCAGTTCTTGGATTGGA
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]