GgaEX1062212 @ galGal4
Exon Skipping
Gene
ENSGALG00000012219 | UNC5C
Description
netrin receptor UNC5C precursor [Source:RefSeq peptide;Acc:NP_989782]
Coordinates
chr4:58244864-58248159:-
Coord C1 exon
chr4:58247979-58248159
Coord A exon
chr4:58246303-58246470
Coord C2 exon
chr4:58244864-58245028
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCTCTTGCTTTCCAGTGA
3' ss Score
9.73
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTAGAGTGGCTGAAGAATGAAGAGGTGATCGATCCTGTGGAAGACCGAAATTTTTACATCACCATTGATCACAACCTGATCATCAAGCAAGCCCGGCTTTCTGACACGGCTAACTACACCTGTGTTGCCAAAAACATTGTGGCCAAAAGGAAAAGCACGACAGCAACTGTGATTGTCTATG
Seq A exon
TGAATGGAGGCTGGTCTACCTGGACTGAGTGGTCAGTGTGCAACAGCCGCTGTGGGAGAGGCTTCCAGAAGCGCACAAGGACCTGCACTAACCCTGCCCCACTCAATGGGGGGGCCTTCTGCGAGGGGCAAAATGTTCAGAAAATAGCTTGCACCACCCTGTGTCCAG
Seq C2 exon
TGGATGGCAAATGGACGTCCTGGAGCAAGTGGTCCACTTGTGGCACAGAGTGTACCCACTGGCGCCGGAGGGAGTGCACAGCTCCGGCCCCGAAGAATGGAGGCAAGGACTGCGAGGGACTGGTGCTGCAGTCTAAGAACTGCACTGATGGGCTCTGCATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5),PF150281=PTCRA=PU(24.1=47.4)
C2:
PF150281=PTCRA=FE(49.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCTGACACGGCTAACT
R:
CAGAGCCCATCAGTGCAGTTC
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]