DreEX6086433 @ danRer10
Exon Skipping
Gene
ENSDARG00000087341 | unc5c
Description
unc-5 homolog C (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-9196]
Coordinates
chr10:1048134-1052090:+
Coord C1 exon
chr10:1048134-1048316
Coord A exon
chr10:1051648-1051815
Coord C2 exon
chr10:1051926-1052090
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTTTAGTAA
3' ss Score
9.96
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
AGGTGGAGTGGCTGAAGAACGAGGAGATTATCGACCCTGCAGATGACAGAAACTTCTACATCACCATCGACCACAACCTGATCATCAAACAGGCCCGTCTGTCAGACACCGCCAACTACACCTGCGTGGCCAAAAACATCGTGGCCAAACGGAGGAGCACCACAGCCACCGTCATCGTCTATG
Seq A exon
TAAACGGTGGCTGGTCAACGTGGACTGAGTGGTCAGTGTGCAGCAGTCGATGTGGTCGTGGCTTTCAGAAAAGGACTCGCAGCTGCACAAACCCTGCGCCGCTCAACGGAGGAGCCATCTGTGAAGGACAGGCCATACAGAAACTGGCCTGTAACCCGCTGTGTCCTG
Seq C2 exon
TGGACGGTCTGTGGACGGAGTGGAGCAAATGGTCGACGTGTGGGACGGAGTGCACTCACTGGAGACGCAGGGAATGCAGTGCTCCAGCCCCCAAAAACGGAGGAAAAGACTGTGAGGGAACCGTGCTGCAGTCAAAGAACTGCACTGACGGACTCTGCATGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087341-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=96.7)
A:
PF0009014=TSP_1=WD(100=87.7),PF150281=PTCRA=PU(32.1=87.7)
C2:
PF150281=PTCRA=FE(35.3=100),PF0009014=TSP_1=WD(100=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGACACCGCCAACTAC
R:
CAGAGTCCGTCAGTGCAGTTC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]