HsaEX6094936 @ hg38
Exon Skipping
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
Coordinates
chr19:38738273-38738648:-
Coord C1 exon
chr19:38738574-38738648
Coord A exon
chr19:38738418-38738503
Coord C2 exon
chr19:38738273-38738347
Length
86 bp
Sequences
Splice sites
3' ss Seq
CACTGACGATGCTGCCCCAGGTG
3' ss Score
5.08
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AGTGATCGGGGTGAGTACCGCACAGAAGAGGGCCTGGTAAAGGGACACGCGTATTCCATCACGGGCACACACAAG
Seq A exon
GTGTTCCTGGGCTTCACCAAGGTGCGGCTGCTGCGGCTGCGGAACCCATGGGGCTGCGTGGAGTGGACGGGGGCCTGGAGCGACAG
Seq C2 exon
CTGCCCACGCTGGGACACACTCCCCACCGAGTGCCGCGATGCCCTGCTGGTGAAAAAGGAGGATGGCGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472-'12-18,'12-11,15-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(11.8=100)
A:
PF0064816=Peptidase_C2=FE(13.7=100)
C2:
PF0064816=Peptidase_C2=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACGCCCAGCTAATTTT
R:
TAGTGGCCTGGACGCAGG
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains