DreEX6085042 @ danRer10
Exon Skipping
Gene
ENSDARG00000055338 | CAPN1 (2 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr21:27457592-27458002:-
Coord C1 exon
chr21:27457919-27458002
Coord A exon
chr21:27457751-27457836
Coord C2 exon
chr21:27457592-27457666
Length
86 bp
Sequences
Splice sites
3' ss Seq
GATGTAAATGTGTGGGCCAGGTG
3' ss Score
4.18
5' ss Seq
TGAGTGAGA
5' ss Score
1.44
Exon sequences
Seq C1 exon
ATTACAAGTTTTTTTGACATGGAGGCCATCACCTTTAAAAAACTAGTGAAAGGCCATGCCTACTCCATTACCGGAGTGGACGAG
Seq A exon
GTGGAGTACAGACGAAGCCAGACCAAGCTGCTGCGCATCAGAAACCCTTGGGGAGAGGTGGAGTGGACGGGACCCTGGAGTGATGA
Seq C2 exon
GTCAAAGGAATGGCGTGAAATCGATGCATCTGTGAGGTCTCGTCTGCACAACTGTCAAGAAGATGGCGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055338-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGACATGGAGGCCATCACC
R:
TTCGCCATCTTCTTGACAGTTGT
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]