BtaEX0006983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48751510-48751888:-
Coord C1 exon
chr18:48751814-48751888
Coord A exon
chr18:48751656-48751741
Coord C2 exon
chr18:48751510-48751584
Length
86 bp
Sequences
Splice sites
3' ss Seq
CACTGACCATGCCTCCTTAGGTG
3' ss Score
7.68
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AGTGATCGGGGTGAATACCGGACAGAAGACGGGCTGGTGAAGGGACACGCATATTCAGTCACGGGCACACACAAG
Seq A exon
GTGTCACTGGGCTTCACCAGGGTGCGGCTGCTGCGGCTGCGGAATCCATGGGGCCGAGTGGAGTGGAATGGGGCCTGGAGCGACAG
Seq C2 exon
CTGCCCACGCTGGGATGCGCTCCCTACAGAGTGGCGAGATGCCTTGCTGGTGAAAAAGGAGGATGGTGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239-'6-6,'6-5,7-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATACCGGACAGAAGACG
R:
TCACCATCCTCCTTTTTCACCA
Band lengths:
135-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development