MmuEX6009497 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29671390-29671791:+
Coord C1 exon
chr7:29671390-29671464
Coord A exon
chr7:29671552-29671637
Coord C2 exon
chr7:29671717-29671791
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTGATGACTTTGTCTTCAGATG
3' ss Score
7.88
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTGATCGGGGTGAGATCCGCACAGATGAAGGGCTGGTGAAGGGACATGCTTATTCTGTCACAGGCACGCACAAG
Seq A exon
ATGTCTCTGGGCTTCACCAAGGTGCGGCTGCTGCGGCTGAGGAACCCCTGGGGCCGCGTGGAGTGGTCCGGGCCCTGGAGTGACAG
Seq C2 exon
CTGCCCACGCTGGGACATGCTCCCTTCTGAGTGGCGAGATGCCCTGCTTGTGAAAAAGGAGGATGGCGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.1=100)
A:
PF0064816=Peptidase_C2=FE(9.4=100)
C2:
PF0064816=Peptidase_C2=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCGGGGTGAGATCCG
R:
CAGAACTCGCCATCCTCCTTT
Band lengths:
150-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: