HsaINT0027457 @ hg19
Intron Retention
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42698124-42700522:+
Coord C1 exon
chr15:42698124-42698141
Coord A exon
chr15:42698142-42700408
Coord C2 exon
chr15:42700409-42700522
Length
2267 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTCCTCCCTCCTCTCTCCAGCCC
3' ss Score
10.36
Exon sequences
Seq C1 exon
AAAAAGAAAAAAACCAAG
Seq A exon
GTAGGTGTGTGGGTAGAGAGCATGAAGTGTGTGTACTCATGCATATGTATGTGCATGCATGTGAAGTGTGCATGTGTGAGCTCATATGCATCCATGCACCAGACTTGCCTCTTCCTCCCCCTCCTTCCTGAGCTTCTGCTGGGGCCGAGCGTGCAGTAATGACAACTACGATTTGCTGGGGGAAGGCTACGTGCCAAGCACTCTTTTAGGTGCTTTCCATGATTAATTCCTTCCTCACAACAGCCCTATGAGATTAGTACTATAACTATCCCCATTTTCAGAGGGAGAAAAGGTACAGACTTGACTAACTTGCCCAAGGCCACACAGCCAGAGAGGGGCAGAGCCAGTACTTAGAGCCAGGCAGTCTGGGTCCAGAGTCCGTGTCCTGAACCACAAGAGGCCATCATACACCATCAGATTTGGTGCTAGCATTTCTGGTGGTGCCTGGTGGTGATGGATCCATCACAGGGGTCCTCCAGGTACTGGTGCTGGCCCAGACCAGAGCTGACACTCCTCAGGCACTACCACATTCCAGGCACTGTGCTTGGGGTCAGTCCCTCTCTTTTTTTTCCCCCCCAATTATAACAGTATCTACAAAGTAGGTGCTGTTATTTTTCCCCTTTCACAGGTGAGATAGACTCAAAGAAGTGAACTTGCCCAAGGAACAGAACTAATGAGTGGGGAAAATGGAACTGGAAACCATGTCTGTTTACTCCAAAACCTGTGTTTCTTGCCCTCTTTCTCTGATGCCAGCCCCCTACACTTCAAGGCCTGTGTTGTCCAGACCCACACTCGGGCCTGCCAGTGTGTGCCTGGCAGGGATGCTCCATGGCCACACCATATCCATCCTACACATCCCCCCTCAGACTGTGACCTCCATTTGCTCTGGGATCCCCACAAGCTTCAGCTGCTTGAGCAAGACACTGCTTAGAAGGCAGAGCAAGCCAAGGCCTCTGGGGCCTGCTGGGAGCCAAAGCTGGGGAGCCGTTTCCACGGGTCTATCTGCTTGAGCTGTCCTAGATGAGCAGCATGGAAGGGCAGTGGTGCATGAGTCCAGGCGGGCTGCTTTTCTGCTCCGAGAGGCTCTGCCTGCCCAGTTGTTCTCTGCATTGCAGCCTCAATCCCCACAGCCTTGCCTTCCCCCGGCTTTCCCTACAGGTGCACCGCATCCACAGTGTTGGCACCATGCAGCAGCCGCTCTCCGTCCTTTTCATATCCTTGTCACTTGCACGAGCATGTCTTGAAAATATCCCTTGTTTGTGTAGCATCTTAAATGTTTTTGCAGTATGATTTTGCATTCAGTATCTCATTTGATCCCCACAAGAGCCCTATGAGGAGGGAAAGCAGATTTTACCATTAAAGGATGAGTAAACTGAGGCCAGAGAGGATATTTTTGGTTTTTTTTGAGACAGTCTCACTCTGTCACCCAGCCTGGAGTGCAGTGGCTTGATCTTGGCTCACTGCAAGCTCCACCTCCCATGTTCACACCATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCACACCCAGCTAATTTTTTTGTATCTTTAGTAGAGATGGGGTTTCACCCAGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCTGCCTGCTTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAGAGAGGATATTTCTTATATGAGGGGCAGGGCTGGGATTCCAGCCCAGTGTTCTGATGGCTCACCCACTGACCATGCCACTAATCCGTGTCCTTTTTCAATCTATACTTTGCAGGGTTGTAGAGGTTCCTTTGAGGTGCCTCAGTAGCTGCCATGGTGATGTGGGGTGCTGAGGGCAAAGAGCTCTGTTCTCATTAATCAGAGAAGCTTGTGTTTTTATATACACCATGTTTCTGCAGGAAATTTAATTTGAACAGTGTTTCCATCTGGAAAAAAAAAAGTCTACAAAATACTTGACAATCACTGCACTAGATCATGCTGCTTTTAGCATTCTTAGCATTTCACGTGCTGAGCTCTCAATACTCTACCATGAGGAGGGATGGAGTGGGTATGAAAAGATAAAGAACTGAAGTCACACGGCTTGTCAGTGGCAGAGATAGAGCTTGAACCGAGGTTGAAGAGCTCCCGCCTATTCCTTTCCTCTTCTCACTGGATAAAGCTGCTCCAAGAGAGGTGCTGCCTCAGTGTGCCTGTTCAGACTGTAATCCTCCCTTCCTTCCTGCCTCCTCCCTCCTCTCTCCAG
Seq C2 exon
CCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-CAPN3:NM_000070:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156271=CEP76-C2=PD(19.0=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)