HsaINT0131465 @ hg19
Intron Retention
Gene
ENSG00000138738 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:9349]
Coordinates
chr4:121732525-121737729:-
Coord C1 exon
chr4:121737608-121737729
Coord A exon
chr4:121732605-121737607
Coord C2 exon
chr4:121732525-121732604
Length
5003 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GTATTTTATTTCTATTTTAGGAG
3' ss Score
10.3
Exon sequences
Seq C1 exon
TTTTGAGCAGCACCAGGAGACTTGCCGGGGGGATGCCAGGTTTGTGTGCAAGGCTGACAGCTGTGGAAAGAGGCTGAAGAGCAAGGATGCCCTGAAAAGACACCAGGAAAATGTCCACACTG
Seq A exon
GTGAGGAGTCGTTGGAGGGTCGTTTCCGAAGGGGCTTCCTTTCCCCAGGCTGCAGCGATCTGTTTTTAATTCTCGCTCTTGAGGAGAGAGCTGGCTTTTCCATTGTGTTTCACACAGATGTGGAGCGCTGGCAGTGGATTTTTTTCTTTCACTGAACACTATTTCTTTCTCAGGTTGAATTTAGCAGCATTTGTTCTTTTTCCCATTCCTGAATTAATTATAACTGTAAGCCTTAGTTAAAGTCTAGTTATGTTTGGGTGGTCAGATGCATTAAGAATTAATATTTTTAAGTAACAATTTTAAATGTTTTGGCATGTGACATTTCTTTTATAAATTGTTAAAATTTATCATTATTAAGTGATGTCCTTCTGCCTTATTATTTTTACAGTAAAAATCCAACTTGTGAAAATACAGTTCTCCTAAGTTAGAGAAAATTGCTAACACATTTTGACATTGGAATTGAATATGTATGGATTAACAAAACAAATATTATTTGAATTCCATCTGATAGCTAGCTAAACAATAAAACAAATATAAAATTTGACTGTCTTTTGGGTTTATCTGCTTAGCACATGGTATACTGTCAGTAAATATATTTTGGCTTAGGGATTAAATCTATTGCAGTGAGTTGAACAGATGGCTGTATTGTCTCAGTTAACTTTTTACTTCTTGTCTTTTTACCTCCAAAGACTTCCTCCTTAAAGGAGGTTGAGATTTATGAAACCCTGTGTGTTCTTCTCTTCATATTCTTTGTTCATGTGTTTATTTTTGCCCTTGACTTCTGGGAAATGGGTGGCTATGTGTCTCTGGATGTGGGGGAAAGTGGATTTCTTTTCTCCCTTCAGTTGTTTATTCTTATATTCAGGAGAAGATGATAATCTGCACCCAGCATCTGTATCCTGTATTTGTTCATTGTCCAAAAAGTATTCACTTTAATAATAATACAGTTATAGAGGCTAGCGTGAACAACTGCTAGCTGCGACTTTGCATCATTGGTTTGGGCTGCATATTAAGTGCAACCTATGGTGAAAGCTCTGTGTGGTGGAAGTAGGGCCTTGTGAAATGCACCTCCAGCTTGGTGCCCTTCACTAGGCTTTTACAGTGTTCTGGTTTCTTTCTTTCCTTTTGAAGAATACACAGCTGACTTAGGGAAGATGGATTTTTTTCTGAATTCAGTATACTGGGGTCTTCCCTATGATTGCAAAAGGCAAGCATAACTTTTTGATAGACTTGCCTTCGTAGTTTTTTGATTTTCAATGCTGTTCTAGTTAAAATGCTATTCTTAATTTTCTTCATCTATGTCTGCAATATATTGTAATAGAACTTTCATGTCAGTTTTAAAGCTTAAGTTTGCTGAACTAAGTAAAAAACCAGATGCATACGAAACTCTGGAGACTTGCATTCTTATTACTGGGCATGTTGTCTTCAGGCTGTGCTATAAGCACAATGTCTTTGAGGCTTCTTGTAGTTGGCCTTGCATATTGTAATATTATTAATTCTGGAAATTTATGGTGATTTTGTAGGAAATAATTCATAAAAGGAAATCTTGTTTTATATATATTTTTTAATTTGTGGACCATATAAAGTGTAAAATCTTGCTGTATTTTAGCTAACGGTTACTATGCCATATGTTTTGCTGGGGTTGGTACATGATGTCATTCTCTCATTCACAGTATGTCTCTTGCTTCTCCCCTTTCCTCCATGGGCTGCACAGGCATTGGAGGAAAGAATATTCCCTATTGGAGATAGCAAGCAAAGCAGCTCTCATATACATGGTTGTAGAATCCTTTATTATAGAAAGGCAAAGGCACTCAAAGAAAGAGATCTTTGATGGCAAATGTTTTTTTGTTAAGGTGATATGAATTGAGGATGATGATTAGAGAGAAGCTGAATTTTTCAATATGGATCACATTTTTCCATAGCAACCATAACATGGGTAGGTAGGTTCTCAGACCAGCTCCTAGAAGCATACTTAGCTCACAGCGTGTTGAAAGTTGAGTACTTAAGTGATTGTGTATTCAGTACAGTTGTATTAATTTCCTCACATGGCCTACTGGTATAAGTAATGTGTTCCTAAATGTTTTTGAAAGTTTAAATCTGAAAGTCAAATATCAGATTTACCTAAATAGGAAAGTTAAGACAGTATAACATCTAGTTATGGCTTTGCAGGTGCTGTTATCCATGAGCCTAGGGGAGCTGGTAGAGTGGTGAGGCTCCTCACAGTTACTTAAGAGGGAACAGAGTGAAGGGGCTAAGCTCCTCCGTCACTTCCCATCTTTCCCTTTTGCTTAGATTCCATGGTTGCTGACAAAGAGACTTTGCATTAATGGGAGATAACATTTATCTACATTCTCAGATGAATAGTCATACATTTTTCCTGTGTGTCTTCTCAGAGGAGCTAGGATTCTTCTAGGGTGAAAAAGAGGAGAAGCCATGAAAAGGAGAGAGAAGACTGAAGATTGGGGATGAGGGTTTGATGTATACCCTTTGATACCTGCAGGCAGAGTTGTGGCAGGAGTGCAGGGGTAAAGTGAGAGTGGTGGGTGGAGAAATCTGTTTCTTTCTCTCCTCTCTCCTCCTCGGACCCATCCAGTGGGAAGGAGTAGGGCCTAGTATCAAGGAGTAGTTGCTATGAGGGCTAGGACAGGGCAATAAAGGATTATTGGTGGAAGATGGACCATCCCAACTAGTAGGACCTGGAAAAGAGGGAATATTCTTTCTGAATGGTGCCTCAGGTATGATATGTTTAGGAAATTGATGACCAAATATATGCTATCAGATATTCATTTTGCCTGGGAGAATTTTCTCCTTTAGTAGCCATGTTACTTTTCAATCACTGAGAAGCATTTTCTTGGCTATCATATTTAGCCTGCTAAAAACAGTGCATTAAATGGAATAGGCATCTTGAATAATAAGACAAAAATTCATATTTGCCATTTGAAAGTATATTTCTTTCATAAATGCAGTCCTATAATAAAACGAAATCATTTTGTAATATTGATTTTACTTGTTTTAGATTTGCTTCAAAATATAGAGAAGTGGGAGAGTGGATGGGATTGAGGTTGAGGCAGGAATGGTCATGGTGAGTCATTGTTGGGGCCAGGTGATGGATAGATGGTGATTCATTATACTATATGCTTACTTTTTGTATATTTGAAATAAACCAATTAAAAGTTGAAAACATATTTTATGGTTATTCATTGTGGTGCATTTGATATTATTATATCACATTTAATAATGTTTGATTGCCTCTTCATTTCTATAACAACTGTGAAATTTGAAATATGAAATGAGCTACTGTAAACATAATCACTACATAAGAAGACAGAATCTGGCTTTGAGTAATAGTATGAATTGCCAATATATTGTTTTATTGTACTTTATTTCTTAATGTTAACTTGATAAGCATATACTTAAAGATTTTATAAAACTCTAGTGCTGGAAAGAATAATCTATAAATTCTATCTTAAAAAACCCAGCTGATTAAATAAAATATTCTGTTGAAATGTAAAAGAATTAACACAATCACTTTATGAATTAATAAATTTAGTTTTTTCTTTTACAAACACATTTGGTTAATTTTAATTTTGCTTTGAATTCCTTGTGGATATATCACTTTCTCTTTTAATACTATACAGTATTAGTACATGGAAAAGTGAAAGGCCTGTTTTATATATGAGAAAGGTGGTATATGAAGCTGTGAAGATGTCTCAAATTTAAAAAGAAAGCATTTACACAGAATGGGAGAAAATATTTGCAAACTACCCATCTGACAAGTGATTAATAACCAGAATATATAAAGTGCTCAAACAACTCAATAGGAAAAAAATCAAATAATCTAATGAAAACATGAAGAAAATATCTGAATAGACATTTTTCAAAAGAAGACAAATGGCCAACAGGTATATGAAAAAATGTTCAGCAAAATTAATCATCAGAAAAAAATGCAAATCAAAACTACAGTGAGATATCATCTCACCCTAGTTAAAATGGCTTCTATCCAAAAGACGGAATAACGAATGCTGGAGAGGATGTGGAGAAAGGGGAATGCTTGTACACTGTTGGTGGGAATGCAAATTAGTACAGCCTCTTTGGGTAATGGTATGGTGGTTACTCAAAAGACTGAAGATAGAGCTAGCAATTCCACTGTAGATATATACCCCAGTGAAAGGAAATCAGTATATTGAAGAGATATCTGCACTCCCATGTTTATTGCAGCACTATTCACAATAGCCAATATTTGGAATCAACCTAAGTGTCCATCAATGAGAGAATGGGTAAAGGTAATTTTCTTAAGTGAAGTAAGCCAGGCACAGCTGCACAAATTTCACATGTGCTCACTTATATATGGAAGCTAAAATTAAAACTATTAAACTCATGAAGATAGAGAATAGAATGATGGTTACCAGAGGCTGGGAAGGGTAGCGGGGAGGGGGTGAATAAAATGGGATAGTTAATAGGTGTAAAAATATAGTTATAATGAATACGATCTATTATTTGATAGCACAACAGGGTGACTATAGTCAACATAACTTATTGTATATTTAAAAATAAAAGAATAGAATTGGAATGTTTCTAACACAAATGATAGATGCTTGAGGTGATAGGTACCCCAATTACCCTGATGTGATTATTACACATTGCATGCCTATATTGAAACATCACATGTACCCGAAAAATACATAACACCTATTATGTACCCATAATAATAAAAATTATGAAAAGGTATATAAGCTTCTGCATTCTCTTGGGAGCTTGGGTCTTTATTCTGAAGGCTCCCCTATATACATGTTAATTAATTTGTATGTCTTTTCTCTAATTAAAAATAATTAAAAAGATTTAAAATATAACTTACTCTTTAAGTTTAATGAATATATCTACAACACTGAATTGTTTAGAATTCTAAATTATGAAGATGAACTTACATATCACCTCGAAACACTATTTGTTTTTCCTCTTAATAGTCTCATTTAAATCATCATGGTATTTTATTTCTATTTTAG
Seq C2 exon
GAGATCCTAAGAAAAAGCTTATATGTTCAGTGTGCAATAAAAAGTGTTCTTCAGCATCAAGCCTACAGGAACATAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138738-PRDM5:NM_018699:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF047079=PRELI=PD(11.6=26.8),PF128742=zf-met=PD(28.6=14.6),PF0009621=zf-C2H2=WD(100=63.4)
A:
NA
C2:
PF128742=zf-met=PU(87.0=74.1),PF144711=DUF4428=PU(38.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)