DreINT0119313 @ danRer10
Intron Retention
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:2007897-2011033:-
Coord C1 exon
chr23:2010912-2011033
Coord A exon
chr23:2007977-2010911
Coord C2 exon
chr23:2007897-2007976
Length
2935 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGTG
3' ss Score
9.9
Exon sequences
Seq C1 exon
TTTCCTGCAGCATAAAGAGGCGTGTAAAGGAGACGAACGCTTCATCTGTAAGGCGGAGAGCTGTGGGAAGAGATTCAAGAGTAAAGACGCACTCAAGAAACACAAAGGCAACATCCATATAG
Seq A exon
GTTAGTCGCACACACACATGTGCACACAAGCATCTGCACACATATGCACACGCAAGCATATGCACGCACACATACATACACACACACAAACATATGCACACATACACACACTTGCATGTACAGGCGTGCATGCACACACACATGCGCACGTGCGTGCACACACACATATATACACACACACATATGCACGCGCTTGCATGCACACACAAATGCACAAACACACACACATAGGTGCATACGCACACACGAGCACACACACAAGCATATGCACACATACACACATATGCATGTACAGACATGCATGCACAAACACACATGCGCAAATACACATATACACACACATATGCACGCGCTTGCATGCACACACAAATGCACACACACACACACATAGGTGCATACGCACACATGAGCACACACACAAGCATATGCACACATACACACGCATATGCATGTACAGACATGCATGCACACACACATGCGCACATACACACATACATATACACATATACACACACACATATGCATGCTCTTGCATGCACACACAAATGCACATACACACACATATGCATGCACCGACATGCATGCACACACACCTGCTCACATACACGCATACATATACACATATACACACACACATATGCATGCGCTTGCATGCACACAAACGCACACACACACACACACATATGCGCATGCGCACACATGAGCATACACACGCTTACACACAAACATACACAAATGCACACACACACAAACATGCACATATACACACATGCGCATATGCATGCACACACATTCATGCACACCTACGCACACAAACTTATGCACACATTTGCATGCACACACTCAAACGCGCAAACACACACATATGCGCATACGCACACATATGCATGCACACACAAACATATACACACGCTTACACGCAAGCATATGCACACATACATTACACACACATGCGCATATACATGGACAGACATGCATGCACACACAACTGTACATTCACATATGCGCACACACATATGCACACACTTGCATGCACAAACACAAACGTGCGGGCACACACACACATATACACACATATGCGCATATGCACACATAAGCACACACACAAACACTTATGCACACACGTACACATGCTGACACAAGGACACAAGAGACATGAATGATTTTAAAGTGCTTTGAATTATGAGGACACAATGTATGTCCTCGTAAACAACCTTAATAGAGTCATACCCGTGTTGTTATACAATCTTGTGTCTTCTAAACCACATAAACCTGTACACACATACATACGCGCGTTGGCGAGTGTGAAATTAGCCGTCTGTAATTAGAGTCTAATCATGGACTGTTTAACGTCTTCATTAATCTCTGCTTTCTGATCCGCTCCTCATCCGCTATGTGTGTGTGCGTGTGTGTGTGTCAGATAACCGTTCAGCGCTCGCTCGCCCTCCACACTCCTCTTTTCAGCAGACTCTCTGTCTCTCTCTGCCAGAAGCGCAGACATCGGAGGAAATTAGTCAAAGACCCCCTAATCGGCTGATGAAAGCATCTATCTGAATGTTTTCAGTATTATTGTCAGTAATTATGCCTGGAGATTTTGGCCACGTGCATCTCAATCAGTCATTTGACAAAATGGATCCAAACAGAATAAAGCTCAACCATTTACTGCGAGCTTGTGGAAGTGTTTAACACTATATAAATGATTTGTGTGTGTGTGTGTGTGTTTGTTTTAAAGAAGACATGGGAAAACAGGATTTTTCTCGCTGTTTAGAAAGAGTTTGATGTTCTGTGTCAGTGGCGTAGTGGACGGGCCCGCAGGGCACGCACGGCGGGGGTTTAGGGGGCCCCACGTCGTCGCGATTTTCAATAATTGAAAATCCAGGAACCGCAATAATCAAACTCTTGGGAACAACTGTGGTCGGAACGAGCAATAATAAAAAAGTTCTGAAACTTTTTTTTATTGTTTTAATCATTAACTAGGAAATGTTGTGGCTTGGCGAGGCAGTGGTGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGGTCGCTGGGTCGCTGGTTCGAACCTCGGCTCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCTTGGGTTTCATCCGGGTGCTCCGGTTTCTCCCACAGTCCAAAGACATGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTGTATGAGAGTCTGTGTGAATGTGTTTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCACTGCTGGATAAGTTGAAGGTTCATTCCGCTGTGGCAACCCCGGATTAATAAAGGGACTAAGCCGACCAGAAAATGAATGAATGTATGTTGTGGCTAATCAAATGCAACCTCGAGCATGCATAATAATGATCTAGTGCTGTTTCCATTGGGATTTTACACACAGGATTTACATGAGAATGAGGAAACACTGGTTTTTGAGGTTCACCGTGTGGCCATTTTTATATAGTGAACTCTTATTAATCAGCTTCATCTAGATCTGTCCAGATTTTAAGTCTATGACTCTTTTAAATTTCTACAGTTTTTTTTGCAGGAGCAACCTGGACTAACATTAAAGTGGATTTATTACAAAGTAAAAGGCTTCAAAGTGTAGATTATGGCCTTTTTAAAGCCTTTTAAAATTCCAGTGCTTTAAGAACTGTTATTGAGGGATTTTGTATCCACTTCCCCTTTGTTTTTTACGGGAAATACACTTAAGCTGACCTTCAACCCTTGTTAAATATAGCTGTGTTTGTCTTTTGCTGGTGTAGTTGATGCTGAAGCAGGAGCAGATTTATGTTAAGAGCTTCCTGATGTTTATTTTGAGCTGATGCAGTGTCTCCATTAGCATCTCCTCATGCCATCATGTGATGTATGATCTGTGTGTGTGTGTGTGTGTGTGTGTAG
Seq C2 exon
GTGGTGCTCGCAGGAAGTTGGTGTGCACCATCTGTAATAAGAAGTGCTCATCCTCACTCAACCTGCAGGAGCACCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288:ENSDART00000127443:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=61.9)
A:
NA
C2:
PF128742=zf-met=WD(100=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]