GgaINT0068811 @ galGal4
Intron Retention
Gene
ENSGALG00000011963 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr4:53677586-53681528:+
Coord C1 exon
chr4:53677586-53677707
Coord A exon
chr4:53677708-53681448
Coord C2 exon
chr4:53681449-53681528
Length
3741 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
GTATTTTGTTTCTGTTTCAGGAA
3' ss Score
11.98
Exon sequences
Seq C1 exon
TTATGAACAGCACAAGGAGGCATGCAGAGGGGATGCCAGATTCATATGCAAGGCAGATAGCTGCGGGAAGAGGTTCAAGAGTAAGGATGCCCTGAAAAAACATAAGGAAAATGTTCATAGTG
Seq A exon
GTAAGAAAGAATTTTATGTTTCTTTGAGAAAAGAAATAAAAACCAAAAAATTTCTAACACATTGCTAGCCTTAAATGTGCAAATCCAGGTCAGCTTTGTCTTTGGTTTCTTTTTTTAATGGATTCATTTGAATCAAAAAGAAAATTAAGTAGTAACTAGTTGCAAGGATAAGTATTTCTCCTCCCCCAGGGAGAAATTGTTGTATACTAGATGAATCATTTGTTTGCTGCAGGAAACATAATGGGAATCTGGGTAAATTTGCACTAGACAAGTGACAGATAAAGCAGAACATTTCAGTAGTGAGGAAAATCAAAATCACAGGTACAAATGGCTACAGGAAGTTGCGAGTTCTTGATCTTTTGGTATTTTCAGGACACAATGGGATGTCTTTCTGGAAGACATGCTTCACAAATTATTAGACTTGATGAGGATATTGCAGGAAACTCTATAGCCTCTGTTGTACGGGAAGCCAAATCAGACAATCTGCTAGTCCCCTAGGCCCTAGCTGTTTTATAACTGTGCACTGCAAATCAATAGTTTTCAATCAAACTTCAATCTGTTTTCATGAAAGGGCAAAATGCTCCTCTCAGGTCCACAATGTAGATCTCAACTGTCATTCTGCTCTGTCTGCATGTCCCCTCTCAGTGTCATTGGCGGATCAGTATGTGTGGGGACAGCAGAATACCACAGTACAAAGAAAACAGTTTTTACTTGATGAGAGCACTGATATGCTTTGTAAGATTTTCATTACTTGAAATTTCTTTCTTCTGCCAAACTCTTACAGTGTACAGAAGCCCTTTCATAACAATTTTTATAGAAGTTTATCTATGTTTTATTTTTGTTAATTTATTGTTGTCAATAAGATTTTTTTTTTCAGCTGTGAGTGTAATGTTTAGGCTCAACTTTGGTTAGTTATATATGGGTATACAAATCCCACAGTTATTCTCTTATATGATCATTCCAGGAATGACTGAGTTTAGGCACCTGGAGAATATTTTAGTTCCACCTATATAGTGAGCAGAGCTTTTATTTTACCATTTGGGAGTCATAGAAATCACAACTGGTGTCAGTACAGGAGGGGAAATAGCCTACTATTGCTGAGGGACATTTCTAGTATTCCTTCATGCCTTGCAAAACCTGGAGGCAAGGGAAAGTAGAAAGGACTGCTACATATGTAGTTCATTATGCAAAGCTATGAACAGAGACATAGATATTCATTATCACCTTCCTCTTCTGAATGCTCTTGTAAGTTAAGGTATTAAGTTCCTGTATTTATATGACTATCAACATATGTCAATACTTAAATTTTACAATAGCAAATATAGGTATGAGGTGAAGTACTTATGTATTACTATGAATTGAAGTGTTGAACTGGTCGACACGGTATATTGTAGTGAGAAGCATACCTTGTATTATGCTTTCACAATCTGCTCACTACACATGGGCAGCTTTGCTCATGATTATTTCTCTTTCTCTCCTCTGATCCATTGTGGTAGTATGACCTGAGCTGGGCATACTGAGTTTACATTCAAAGTCTTTGAAATCTTATATGGTCTTAAAGCCTGCTATTAGATTCTTTCATTTATTTTTACAAATGTTTGTTGGAAATAAAATTCTTTATTTGGAAATAAAACTGTGGGCAGTAAAATAATCTAGCAATGAATAACATTTTATCCAATTTCCTCCATTAACAGCAGGCTATGATATATCAAGATAAAATATGTAACCTTTATTTTCTAGTTTAGCTGCTTTAGTTTTAATCTTATCAATCATCAACAGAACGGAAACAATGAAGACTGAGACATGTTTTGCTAGTCTCAGAGGGCTAAGAAATGCTAGTGTTTCTAGTTACAGCCCCCACGGATCATTTGAGATTAGAAGTCATTTCAACATGTTTTAGCAAAATGTTTTGTATATATTTGCATTGAACTTTTAAAAAGTAGTTTTATTTCAACAATATAAATAATAAATAAGTCTTGTTATCAGTGTCATTTGAAAGTCTGTTCTTTTGCATGAGAAATTACTTTTTCTGAAGTGGTATGAAATGTTCTGTTTAGACTTGCAATGTTTACATTCATGCACACTGTTGGCATCAATGGATGGAAAAAATATCAGCTAGAAAGATATGTTATAGTTTCAGTTAGACAAAAGACCTTGTTTTTACCTCTCATATTAGTAAACCAAAGGAGTAATTTATCTGCTTGTATTGTATGCCAACTAAGAGGATGTAGTTAACTACGACATCATTGTTCTTAAGTGAACCCAGGAAGAACAGTTCCCTTATTGAGGGACAATTCCTGCTGTCCTGGGTGATTTATCCTTTGTCCATTTCAGGAAAAATAAAGGATTTCCTTTTGATTGCATTTGTAAGTGGAAATTTGGTGCAGAGACTGCTCTGCAGCCACAGGCTGCTGGTCTTCTTGCCTCATTATTTTACTTAATACACATAAGTTTTGAGTGGCCCACATGCCTTTTTGAAGCATCTTGAGGTGAGGGCTCTCATGACCACTTTAATAACAATCTTTAATTGACTGTTTTGTTTGTATATAGGCTTTAATGTGTAGTCTAGAGCAGTACATGTGATCTTATAGACCTGTTTCTTAGTACTAAAATAGATGGGGAGAGAGATTATCATTATTTATTAATGCTTACTATTTTGGAAGGGAAGACAAAAGTAAGGCCAAGCTTAATGTTTTCTTTCTGAAAATTCCTCCCAAGAAATAAAGTGGAAAAGCAAATAATCATAATCAATATCATTTTAATTCTTTAGGACAGCAAGATTACGAAAAATACACAATGCTAAGAGTCTGAAAAGTAGAGCTGGAAGCTATCAATGATTTTGATTAGGATCCAGTTCCTCTGTGTTTGAATAGACAATGCTTGCCTTTCTTTGGTTCTGAGTCCATTCTTTTTAGTGTTCAGTGCAGTTTGAACATTTCTTAATATAAGCTATGAAATATCTTGCATGGACATGTGATTATAAACAAATTATAAACAAATAATTAGGTTTGTGGTGTCTTTGCCTTGTAATAAAATAACTTTGTAGGTTACTAATAATAGAGAAGCCCAATTAAATGCTCTGTCAGTTTTTAAAGCAACTGTGAAAAAGGAAGGAAAATATATTTGGTAGCTGACCACTTAGAGTTTGAACTGTGATTTATATTACAAACTATACTTGAATTCATGATCTGGTACTAATACAAATTTCCCATCTTGTTCAGTTCAACACCATTAATGCATGTTATTTTATTCAGTAGAAATCTTAATGTTTTTTGAATGAAGAAAATTGGGAAATATTTGTTCGGGATTTTTTTTTTGGTCATTGTTGCACTAACTCTTTTCAGAAACATTTCTATTAAAATTACAGTATACAGTTCTTGAAGATATTAGTTGTATTGGCTTCTGGAAGGATACAGTTGTTCAGTGAAATTTTTAAAGTGAATTGTTCTTAGTTGTGAATTGTGCTCTTCATACTTAGTTGGTAATGTGTGGTAATACCTATATGAGGGCTTTTTTTTTCTTTATTATTCTAGTTTAGTTGATTTACATTCCATTAGTAACTGACTAGTTGGGCACCCACAGAGAACTCCTGATACTGAATACTTTCAAGATGGGGTATAAATGTAAAGATCTTATGTCAGTGAAATGACCCGTGAAAAGTCACAAGCTCAGTAGAAATATTTAGGTTCTTTCTTAGCACTTCCTTTTTAAGATGTTGGTGGTATTTTGTTTCTGTTTCAG
Seq C2 exon
GAAATTCTAGGAAAAAGCTGACGTGTTCAGTGTGCAATAAGAAATGTTCCTCAACAACAAATCTCCAGGAGCATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963:ENSGALT00000019510:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(28.6=14.3),PF0009621=zf-C2H2=WD(100=61.9)
A:
NA
C2:
PF128742=zf-met=WD(100=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]