MmuEX0009063 @ mm9
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73700719-73715381:-
Coord C1 exon
chr17:73715266-73715381
Coord A exon
chr17:73709735-73709871
Coord C2 exon
chr17:73700719-73700893
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATCCTCGTCTTTCTTCCAGTTC
3' ss Score
10
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGACTGCTGGTTCCTGGCAGCACTGGGCTCCCTGACCCAGAACCCGCAGTGTCTGCAGAAGATCCTGATGGACCAAAGCTATTCGCACCAGTATGCTGGGATTTTCCAGTTCCGG
Seq A exon
TTCTGGCAGTGTGGCCAGTGGGTGGAAGTAGTGATAGATGACCAATTGCCCGTCATAGGCGATAACTTCCTTTTTGTGCATCCTCGAGGAGGCAACAAGGAATTTTGGCCCTGCCTGATGGAGAAAGCCTATGCCAA
Seq C2 exon
GCTACTTGGCTCCTATTCCCAATTACACTATGGCTACCTTCCTGATGCCCTGGTGGACCTCACAGGAGGAGTGGTCACCATCATCAACCTGCACTCCTCTCCATTTGACCTACTGACGACAGTGAAGACCGCAATCCAAGCAGGCTCAATGGTGGCCTGTGCCACCGAAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(12.7=100)
A:
PF0064816=Peptidase_C2=FE(15.0=100)
C2:
PF0064816=Peptidase_C2=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGCTGGTTCCTGGCAG
R:
ATTGCGGTCTTCACTGTCGTC
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: