GgaEX6028717 @ galGal4
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7759247-7763501:+
Coord C1 exon
chr3:7759247-7759365
Coord A exon
chr3:7761618-7761751
Coord C2 exon
chr3:7763327-7763501
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCTTTCCTTCAGTTC
3' ss Score
11.58
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGACTGCTGGATGCTGGCTGCCCTGGGCTCCCTGACAATGCAGAAGCAATTTTTGGAAAAGGTTTTACCAAAGGACCAAGGATTCCAGAGTGATTATGCTGGGATTTTCCATTTTCGG
Seq A exon
TTCTGGCAGTTTGGAGACTGGGTGGATGTAGTGATAGATGACCGGCTGCCTTTCCTAAATGGGAATTACCTGTCTGTACACGCTCGAACATCAAATGAATTCTGGCCATCCTTGCTGGAAAAAGCATATGCCAA
Seq C2 exon
GCTGCAGGGCTCCTACCAGAACTTGCACGGGGGCTACATTTCTGATGCTTTAGTAGACTTCACAGGTGGAGTCCAAATGCAGTTCTCACTAAAGGACCCCCCTCCTGATCTGGAGGACGTGCTGAAAGCAGCTAGCAAATCTCGGTGTCTGATGGGATGCAGCACCTCGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.2=100)
A:
PF0064816=Peptidase_C2=FE(14.9=100)
C2:
PF0064816=Peptidase_C2=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCCTGACAATGCAGAAG
R:
GTGCTGCATCCCATCAGACAC
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]