RnoEX0016687 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24620967-24633207:-
Coord C1 exon
chr6:24633092-24633207
Coord A exon
chr6:24627492-24627628
Coord C2 exon
chr6:24620967-24621141
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATCCTTGTCTTTCCTCCAGTTC
3' ss Score
10.46
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGACTGCTGGTTCCTGGCAGCACTGGGTTCTCTGACCCAGAACCCGCAGTGTCTGCAGAAGATCCTGATGAACCAAAGCTTTTCGTACCAGTACGCTGGGATTTTCCACTTCCGG
Seq A exon
TTCTGGCAGTGTGGTCAGTGGGTGGAAGTAGTCATCGATGACCGCTTGCCTGTCGTAGGCAACAACTTCTGCTTTGTGCATCCTCGCAGAGGCAACCAAGAATTCTGGCCCTGCCTGATGGAGAAAGCCTATGCCAA
Seq C2 exon
GCTGCTAGGCTCATATTCCCAATTACACTATGGCTACCTTCCTGATGCGCTGGTGGACCTCACAGGAGGAGTGGTCACCAGGATCAACCTGCACTCCTCTCCCTCTGACCTATTGATGGTAGTGAAGACCGCAGTCCAGACAGGCTCAATGGTGGCCTGTGCCACCCCAAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(12.8=100)
A:
PF0064816=Peptidase_C2=FE(15.2=100)
C2:
PF0064816=Peptidase_C2=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGTTCTCTGACCCAGA
R:
CACCATTGAGCCTGTCTGGAC
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]