BtaEX6044984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69082607-69094747:+
Coord C1 exon
chr11:69082607-69082722
Coord A exon
chr11:69087949-69088082
Coord C2 exon
chr11:69094573-69094747
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCTCTCTCCTCCAGTTC
3' ss Score
12.36
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGATTGCTGGTTCCTGGCAGCACTGGGGGCCTTGACACAGAGTCCACAGTATCTGCAGAAGATCCTCATAGACCAAAGCTTTTCATACCAGTATGCGGGGATTTTCCATTTTCGG
Seq A exon
TTCTGGCGGTGTGGCCAGTGGGTGGAAGTGGTCATTGACGATCGCCTACCTGTCCTGAACAACGAGTACCTCTTTGTCAAACCTCGCAACAAGCGAGAGTTTTGGCCGTGCCTGCTGGAGAAGGCCTACGCCAA
Seq C2 exon
GTTTCATGGGTCCTATGCCAACCTGCACTATGGCTACCTCCCCGATGCCCTGGTGGACCTCACGGGAGGGGTGGTCACCAACATCAGCCTGCACTCATCCTCGTCTGACCTGATGACGATGGTGAAGACAGCCGCGGAGGCAGGCTCTCTGATGACCTGCAGCACCCTGGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(12.7=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTGCTGGTTCCTGGCAG
R:
GGCTGTCTTCACCATCGTCAT
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]