MmuEX0011691 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123647841-123656086:-
Coord C1 exon
chr5:123655894-123656086
Coord A exon
chr5:123653452-123654020
Coord C2 exon
chr5:123647841-123647965
Length
569 bp
Sequences
Splice sites
3' ss Seq
GATTCTGCTTCTGCTTTCAGCTG
3' ss Score
9.05
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATTTGACCGAGAGGCTGAGTTCTCTATAGGAACACCCACATTTGTATGGATGAGTGGGGAAAGATAGCGGCAGCAGACAAGGAAAAAGCGTCCTGACCTCCCGAGAACATGAGTATGCTAAAACCCAGCGGCCTGAAGGCCCCTACCAAGATCCTTAAGCCGGGAAGCACAGCCTTGAAGACGCCTGCTGCTG
Seq A exon
CTGCAGCTCCAGTGGAGAAGACAATACCCAGTGAGAAAGCCTCGGGCCCTCCATCCTCCGAGACCCAAGAGGAGTTTGTGGATGACTTTCGAGTTGGAGAACGTGTTTGGGTGAACGGGAATAAGCCCGGATTTATCCAGTTTCTTGGGGAAACTCAGTTCGCACCAGGCCAGTGGGCTGGGATTGTTTTAGATGAACCCATAGGGAAGAACGATGGCTCTGTGGCGGGAGTGCGGTATTTCCAGTGTGAACCTTTAAAGGGCATATTCACCCGACCTTCAAAGCTAACGAGGAAGGTGCAGGCAGAAGATGAAGCCAACGGCCTGCAGGCAGCTCCTGGGAGAACTGCTTCACCTCTGTCCACTGCTGCAGCTACCATGGTGTCTTCTTCTCCAGCCACTCCCTCAAATATTCCCCACAAACCGTCCCAGTCAACGGCAAAAGAACCTTCGGCTACACCTCAAATTAGCAACCTCACAAAAACTGCCAGTGAGTCGATCTCCAACCTTTCAGAGGCTGGCTCTGTCAAGAAGGGGGAGCGGGAGCTCAAGGTCGGAGACAGGGTGCTG
Seq C2 exon
GTTGGTGGCACTAAGGCTGGCGTAGTCCGCTTTCTTGGCGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGTGTGGAGTTAGACGAGCCTTTGGGGAAGAACGATGGTGCTGTGGCCGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'21-13,'21-11,24-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.662 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
PF0130220=CAP_GLY=WD(100=34.7),PF0130220=CAP_GLY=PU(7.6=2.6)
C2:
PF0130220=CAP_GLY=PU(38.7=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGCTGAGTTCTCTATAGGA
R:
CTTGTTCCGGCCACAGCAC
Band lengths:
311-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types